| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3613 |
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| Symbol | |
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| ID | 7970688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3823434 |
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| End bp | 3824279 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794198 |
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| Product | two component transcriptional regulator, LytTR family |
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| Protein accession | YP_002945496 |
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| Protein GI | 239816586 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCCA CTGCCCTCAT CGCCGAAGAC GAACCGCTGC TCGCCCAGGC CCTCAAGGCC
GAACTCGCCG CGGCATGGCC CCAACTGCAG GTGCTCGCCA CCGCGGGCGA CGGCCGCAGC
GCCGTGCGGG AGGCTCTGCG CCTGCTGCCG CAGGTGCTGT TCTTCGACAT CCGCATGCCG
GGCCTCGACG GCCTGGGCGC CGCCGCCGAA CTGGCCGACC GCTGGCCCGT CGACGAGGCG
CCCATGCCGC AATTGGTCTT CGTGACCGCC TACGACGAAT ACGCCGCCCG CGCCTTCGAG
ACGCAGGCCA TCGACTACGT GCTCAAGCCC GTGCAGCCCG AGCGTTTGCG CAAGACCGTG
CTGCGGCTTC AGCAGGCGCT GGCTGCGCAG CTGCGGGTAA AGCCAGCTCC TGCCGCCGCC
GACGAAGCGC TGGAGAGAAC CCTCGCGCAG TGGCGCGAGC TGCTTGCCGC CGCAGCGGGC
AATGGCATGT CGGCGCCGCC CGCCGCCTCC ACCGCCCCGC TGAAGATGAT TGCCGCCAGC
GAAGCCGGCG GCAGCACCGT GCGCATGGTT CCGATCGACG AGGTGCTGTA CTTCGAAGCC
GCCGACAAAT ACATCCGCGT GCTCACCGCC ACGCACGAAT ACCTGATCCG CACGCCGCTC
AAGCAGCTGC TGGCCCAGCT CGACCCCGAA ATCTTCTGGC AGGTGCACCG CGCCGTGGTG
GTGCGCAGCT CGGCCATCGA GGCCGTGCAC CGCGACGAGG CCGGCAAGCT GCACCTCGAC
CTGCGCGGCC GACCCGAGAA AATCCCCGTC AGCCGGCTCT ACGGCCACCT GTTTCGCGCC
ATGTGA
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| Protein sequence | MNSTALIAED EPLLAQALKA ELAAAWPQLQ VLATAGDGRS AVREALRLLP QVLFFDIRMP
GLDGLGAAAE LADRWPVDEA PMPQLVFVTA YDEYAARAFE TQAIDYVLKP VQPERLRKTV
LRLQQALAAQ LRVKPAPAAA DEALERTLAQ WRELLAAAAG NGMSAPPAAS TAPLKMIAAS
EAGGSTVRMV PIDEVLYFEA ADKYIRVLTA THEYLIRTPL KQLLAQLDPE IFWQVHRAVV
VRSSAIEAVH RDEAGKLHLD LRGRPEKIPV SRLYGHLFRA M
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