| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3605 |
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| Symbol | |
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| ID | 7970680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3811018 |
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| End bp | 3812526 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794190 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002945488 |
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| Protein GI | 239816578 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00599235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAAG CTGCCATGAC ACACCGACAA CGCATCCTTT CGCATCTGCC CGGCAGGCTG
TCCGCGCTCG CCTTGGCGGC CGTGCTGGCC GGCTGCGCCG TGGGCCCCGC CTACGAAGTA
CCCACCTCGG CTGCGCCCGC CGGCTGGAAG GAGCAGAAGA CCGCCGAAGG CTGGCTGCCC
GCCGCGCCGG CCGATGCGCT CGACCGCGGC GAATGGTGGA AGCTCTTCGG CGACGCCACG
CTCGACGAAC TGGCCGCCCG CGTGCAGGTG TCGAACCAGA ACATCGCCGC GGCCGTGGCC
AACTACGCGC AGGCCCAGGC GCTGGTGCGG GGCGAGCGCG CTGCGCTGTT CCCCACGGTA
TCGCTCGACG GCAGCGGCCG GCGCAGCGGC AACATCGGCG GCACCAGCAA TGCGGCCAAT
GCGTTTTCGG CGACGCTCGG GGTCGACTGG GCGCCCGACG TGTGGGGGCG CCTGCGGCAG
GCCGTGAGCA GCGCGCAGGC CAATGCCGAG GCCAGCGAGG CCGACTTGGC GTCGGCGCGC
CTGTCGGCCG TCGGCGACCT GGCCACCAAC TACTTTTCGC TGCGCGAGGC CGATGCCGAG
ATCGTGCTGC TCGACCAGAC CATCGAGGGC TACCAGCGCG CCTTCGAAAT CACCAGCAAC
CGCTACAAGG CCGGCATCGC GGCCCAGACC GACGTGCTGC AGGCGCAGAC CCAGCTGGTG
AACGCGCAGG CCGAACGCGT GGGCCTGCAG CGCACCCGCA CCACGCTGGA GCACGCCATT
GCCATGCTGG TGGGCGTGGC GCCGGCCGAT TTCAGCCTGC CCGCGGCGCA GTGGACGCCC
ACGGTGCCCG GCATTCCGAC GGGCGTGCCT TCCACGCTGC TGCAGCGCCG GCCGGACATC
GCGGCGGCCG AGCGCGCGGT GGCTGCGGCC AATGCGCAGA TCGGCATCGC GCGCTCGGCG
TACTTCCCCA ACTTCGGGCT CAGTGCCTCG GTGGGCAGCA GCGCGAGCCG GGTGAAAGAC
CTGTTCAACG CGTCCAATAC GCTGTGGGCG CTGGGTCTGT CGGTGGCGCA GGTGGTGTTC
GATGCGGGCG CCATCGGCGC CACGGTCGAC TCGGCCAAGG CGGCGCACGA AGCCAGCGTG
GCGCGCTATC GCCAGACCGT GCTCACCGCC TTCCAGGCGG TGGAAGACCA GCTCACTGCC
GGCGCCGCAC TGGCGCAGCA GGAAGGCCTG CGGCGCGAGG CCTCGGCCGC GGCCGACAAG
ACCGAGCAGC AACTGCTCAA CCGCTACCGC GCGGCCCAGG TGAGCTACAC CGAGGTGGTC
ACTGCGCAGG CCGCCGCCCT CGGCGCGCGG CGCACGCTGG TGCAGCTGCA GGTGAATCGC
CAGACCGCCG CGGTGGCGCT GATCCAGGCC CTGGGCGGCG GCTGGCATGC CGGCGGGGCG
GGCGGCACCG TGTCGTCCAC GCCTTCGACG GCGCAGGCTG CCCCTTCTCC GCAGCGCGGA
GTGAAGTAG
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| Protein sequence | MNEAAMTHRQ RILSHLPGRL SALALAAVLA GCAVGPAYEV PTSAAPAGWK EQKTAEGWLP
AAPADALDRG EWWKLFGDAT LDELAARVQV SNQNIAAAVA NYAQAQALVR GERAALFPTV
SLDGSGRRSG NIGGTSNAAN AFSATLGVDW APDVWGRLRQ AVSSAQANAE ASEADLASAR
LSAVGDLATN YFSLREADAE IVLLDQTIEG YQRAFEITSN RYKAGIAAQT DVLQAQTQLV
NAQAERVGLQ RTRTTLEHAI AMLVGVAPAD FSLPAAQWTP TVPGIPTGVP STLLQRRPDI
AAAERAVAAA NAQIGIARSA YFPNFGLSAS VGSSASRVKD LFNASNTLWA LGLSVAQVVF
DAGAIGATVD SAKAAHEASV ARYRQTVLTA FQAVEDQLTA GAALAQQEGL RREASAAADK
TEQQLLNRYR AAQVSYTEVV TAQAAALGAR RTLVQLQVNR QTAAVALIQA LGGGWHAGGA
GGTVSSTPST AQAAPSPQRG VK
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