| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3562 |
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| Symbol | |
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| ID | 7972188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3759388 |
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| End bp | 3761676 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794147 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_002945445 |
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| Protein GI | 239816535 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.482767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGATTCA TGACGAACCA GAATGCCCTG AAACCGATGG CGCCGCATGC CCACTCCCAT
GCGCCGGCCG CTCCCGAAAC GGCCTGCTGC GGCAGCACGG CCTGCGGCTC GCCGGCCGTT
GCCGTGGCCG CTGCCGACAT TCCGAAGGGC GCCTTGCTCT TTCGCATTCC CACGATGGAC
TGCGCGGTCG AAGAGTCCGA GATCCGGCGC GCGCTCGAGC CGGTCGCGGG TGTGCGGGGG
CTGCGCTTTC GGCTCGGTGA ACGCACCATG GCCATCACGG CCGACGAAGG CGCCTTGCCC
GGTGCGCTCG ACGCCATCCG CAAGGCGGGC TTCAAGCCCG AACCGCTGAA CGGCGCGGCA
GGCAGCCCGG CCGATGGTGC GCAGCCGGTG GCAGCCTCTG CAGGCATCGC GGGCATGAGC
AGCGGCCTCG TGCGCCTCGT TGCCGCGCTG GTGCTCGCCA TCGCGGCCGA GGCCGTTGCC
TTTCTCGCAC CGGAGGGCGC CGGGTCCATG GCGGCGGAGA TGGGGCTCGC GCTCGCGGCC
ATCGCACTGG CCGGCCTCGA CACTTACAAG AAGGGCTTTG CCGCGCTGCT GCGCGGGCGC
CTGAACATCA ACGCGCTGAT GGCCGTGGCG GTCACGGGCG CCTTCCTGAT CGGGCAATGG
CCCGAGGCCG CGATGGTGAT GGCGCTCTAT GCCATTGCCG AGCTGATCGA GGCGCGCGCC
GTCGATCGCG CGCGCAACGC CATCCAGGGC CTGCTGGCGC TGACGCCCGA ACTGGCCGAG
GTCAGGCAGC CCGATGGCCG CTGGAAGACG GAGAAGGCCG ATGCGGTGGC GCTCGATGCC
GTCGTGCGCA TCCGGCCCGG CGAACGCGTG CCGCTGGACG GCGTGGTGAC CGAAGGGGCG
AGCGCCATCG ACCAGGCGCC GGTCACGGGC GAGAGCATTC CGGTCGACAA GGCGGTGGGA
GACGCGGTGT TCGCAGGCAC CATCAACCAG ACGGCCGCGC TCGAATTCCG CGTCACCGCG
GTGGCGGCCA ACACCACGCT CGCGCGCATC ATCCATGCGG TCGAAGAGGC GCAGGGCACG
CGCGCGCCCA CGCAGCGCTT CGTCGACCGG TTCGCGGCCG TCTACACGCC CGCGGTCTTC
GTGCTGGCCA TTGCCGTGGC GCTGCTCACG CCCTGGCTCA TGGGCTGGAG CTGGACCGAG
GCCATCTACA AGGCGCTGGT GCTGCTGGTC ATTGCGTGCC CGTGCGCGCT GGTCATCTCG
ACGCCCGTCA CGGTGGTGAG CGCGCTGGCC TCGGCCGCGC GGCGCGGCAT CCTGATCAAG
GGCGGCACCT ATCTCGAAGA GGCGCGCAGG CTCAAGGCCG TGGCACTCGA CAAGACCGGC
ACCATCACCG AAGGCAAGCC GAAGCTGGTC GCATCGCGCC TGCTCGACCC CGCGGCGGAT
GAAGCCGCGA TCTTTGCCAT TGCCGCGAGC ATCGCGGGCC GCTCCGACCA TCCGGTGTCG
AAGGCCATTG CCGACGGGCT GAACCGCGAG CACCAGCCGG TCGGCGGCTT CACGGCCTTG
CCCGGACGCG GCGTGCAGGC CGTGCACGAA GGCCGCAGCT ATGTGCTTGG CAACCACCGC
CTGATCGAAG AGCAGGGGCT GTGCAGCCCC GCGCTCGAAG CCGAGCTGAA GCAGCATGAG
GAAGCGGGGC GCACCGTCAC GCTGCTGGCC TCCGGCCAGG CCGTGCTGGC GCTGTTCGCG
GTGGCCGACA CCATCAAGCC CTCTTCGAAG GCCGCCATGG CCGAGCTGCG CGCGCTGGGC
GTCACGCCCG TGATGCTGAC CGGCGACAAC GCCGCCACGG CCAGGGCGAT CGGCCTGCAC
GCGGGCATCG ACGACGTGCG CGGCAACCTG CTGCCCGAGG AGAAGCTCGA TGCCATCAAG
ACGCTGCAGC AGCGCCACGG CATGGCCGGC ATGGCGGGCG ACGGCATCAA CGATGCGCCC
GCGCTTGCGC AGGCCGACAT CGGCTTTGCG ATGGGCGGCG CCGGCACCGA CACCGCCATG
GAAGCGGCCG ACGTGGTCAT CATGAACGAC GACCTGCGGC GCCTGCCCGA AACCATCCGC
CTCTCGCGCC ATGCGCATGC GGTGCTGTGG CAGAACATCA CGCTCGCGCT CGGCATCAAG
GCCGTGTTCT TCGTGCTCGC GGTGTTCGGC AGCGCCACCA TGTGGATGGC GGTGTTTGCC
GACATGGGCG CCAGCCTGCT GGTGGTGGCC AACGGATTGC GGCTGATGCG CGCACCGAAG
GGCGGCTGA
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| Protein sequence | MGFMTNQNAL KPMAPHAHSH APAAPETACC GSTACGSPAV AVAAADIPKG ALLFRIPTMD
CAVEESEIRR ALEPVAGVRG LRFRLGERTM AITADEGALP GALDAIRKAG FKPEPLNGAA
GSPADGAQPV AASAGIAGMS SGLVRLVAAL VLAIAAEAVA FLAPEGAGSM AAEMGLALAA
IALAGLDTYK KGFAALLRGR LNINALMAVA VTGAFLIGQW PEAAMVMALY AIAELIEARA
VDRARNAIQG LLALTPELAE VRQPDGRWKT EKADAVALDA VVRIRPGERV PLDGVVTEGA
SAIDQAPVTG ESIPVDKAVG DAVFAGTINQ TAALEFRVTA VAANTTLARI IHAVEEAQGT
RAPTQRFVDR FAAVYTPAVF VLAIAVALLT PWLMGWSWTE AIYKALVLLV IACPCALVIS
TPVTVVSALA SAARRGILIK GGTYLEEARR LKAVALDKTG TITEGKPKLV ASRLLDPAAD
EAAIFAIAAS IAGRSDHPVS KAIADGLNRE HQPVGGFTAL PGRGVQAVHE GRSYVLGNHR
LIEEQGLCSP ALEAELKQHE EAGRTVTLLA SGQAVLALFA VADTIKPSSK AAMAELRALG
VTPVMLTGDN AATARAIGLH AGIDDVRGNL LPEEKLDAIK TLQQRHGMAG MAGDGINDAP
ALAQADIGFA MGGAGTDTAM EAADVVIMND DLRRLPETIR LSRHAHAVLW QNITLALGIK
AVFFVLAVFG SATMWMAVFA DMGASLLVVA NGLRLMRAPK GG
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