| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3458 |
|---|
| Symbol | |
|---|
| ID | 7972569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3642181 |
|---|
| End bp | 3643092 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644794042 |
|---|
| Product | tyrosine recombinase XerD |
|---|
| Protein accession | YP_002945341 |
|---|
| Protein GI | 239816431 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.664548 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGG CCGCCGCCAC GCAAACTCCC GAGATCGACG ACTTCATCGA TGCCCTCTGG
CTCGAGGACG GGCTGTCGAA GAACACGCTG GCCGCCTACC GCCGCGACCT CGCGCTGTTC
GCGCAGTGGC TGGGCAGCCA GCGCAGCGGC CGCGCGCTCG ACACGGCGCA GGAGTCCGAC
CTGCAGGCTT ACATGGGCGC GCGCCTGTCG ACCCGGGGCA AGGCCACCTC GGCCAACCGG
CGGCTCACGG TGTTCAAGCG CTACTATCGC TGGGCGCTGC GCGAGCGCCG CATCGCAGCC
GATCCGAGCA TCCGGCTCGC GCCCGCGCGG CAGATGCCGC GGGCCATCAA GACGCTGTCG
GAAAAGCAGG TGGACGATCT GCTGGCCGCA CCCGACGTCG AAACCCCGCT CGGCCTGCGC
GACCGCGCGA TGCTCGAGCT GATGTATGCG AGCGGCCTGC GCGTGAGCGA GCTGGTGGCG
CTCAAGGTCA TCGACATGAG CCTCAACGAC GGCGTGCTGC GCGTGCTCGG CAAGGGCAGC
AAGGAGCGCC TCGTGCCCTT CGGCGGCGAG GCGCGGCGCT GGATCGAGCG CTACCTGGAC
GAGTCGCGCC CCACCATCCT CGACGGGCAG CAGACGCCCG ACCTGTTCGT GACCGCGCGC
GGCGCAGGCA TGACGCGCGT GATGTTCTGG ATCATCGTGA AGAAGCAGGC CGCCGCGGCC
GGCATCCATG TGCCGCTGTC GCCGCACACG CTGCGCCACG CCTTCGCCAC GCACCTGCTG
AACCGCGGCG TGGACCTGCG CGCGGTGCAA TTGCTGCTCG GCCATGCCGA CATCTCCACG
ACCACCATCT ACACCCACGT GGCGCGTGAA CGGCTCAAGC AGCTGCACGC GCAGCACCAT
CCGCGTGGCT GA
|
|---|
| Protein sequence | MTEAAATQTP EIDDFIDALW LEDGLSKNTL AAYRRDLALF AQWLGSQRSG RALDTAQESD
LQAYMGARLS TRGKATSANR RLTVFKRYYR WALRERRIAA DPSIRLAPAR QMPRAIKTLS
EKQVDDLLAA PDVETPLGLR DRAMLELMYA SGLRVSELVA LKVIDMSLND GVLRVLGKGS
KERLVPFGGE ARRWIERYLD ESRPTILDGQ QTPDLFVTAR GAGMTRVMFW IIVKKQAAAA
GIHVPLSPHT LRHAFATHLL NRGVDLRAVQ LLLGHADIST TTIYTHVARE RLKQLHAQHH
PRG
|
|---|
| |