Gene Vapar_3456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3456 
Symbol 
ID7972567 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3640540 
End bp3641130 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content68% 
IMG OID644794040 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002945339 
Protein GI239816429 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.659534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAGCG CCATCGCCCC CTCGACCGCA CTCGCCGCCG GCAGCACCCG GGAGCAGATT 
CTCGGGGTGG CGCGCCGCCT GATCGAAACG CGCTCCTACC TGGGCTTCAG CTTCCAGGAT 
GTGGCCGATG CGGTCGGCGT CCGCAAGGCG AGCCTGTACC ACCACTTTCC GACCAAGGAA 
GCGCTGGGCA TTGCGGTGAT CCGGCAGGCC ACGCAACTCT TCAAGGATTG GGACGCGGCG 
CGGGTGCGCA CGCCGAAGGA CGCGCTCGAA TCCTATTTCC GCATGTACCG CGACACGCTC 
AAGGCAGGCT CGGGCATGTG CCCCGCGGGA GCGCTGACGC CCGGCTGGGA TTGCATCGAC 
GAGGAACTGC GCCAGGCCGT GCAGGAACTG CGCAACACCC AGGTGCTGTG GCTCACGGGC 
GTGCTGGGCG CACTGGCGCC GGCCTGGCAG AAGAAGGGCG CATCGCTTGC ATCGCAGGCG 
GCCTATGTGT TCTCGGTGTG TCAGGGCGCG CTGCTCGCAT CGCGCATGAC GGGCCGCGTC 
GAAGACTTCG ACGAAGCCAT TGCGCAGCTC AGGAGTTCCT TGCCCGGCTG A
 
Protein sequence
MTSAIAPSTA LAAGSTREQI LGVARRLIET RSYLGFSFQD VADAVGVRKA SLYHHFPTKE 
ALGIAVIRQA TQLFKDWDAA RVRTPKDALE SYFRMYRDTL KAGSGMCPAG ALTPGWDCID 
EELRQAVQEL RNTQVLWLTG VLGALAPAWQ KKGASLASQA AYVFSVCQGA LLASRMTGRV 
EDFDEAIAQL RSSLPG