| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3454 |
|---|
| Symbol | |
|---|
| ID | 7972565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3638797 |
|---|
| End bp | 3639273 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794038 |
|---|
| Product | MaoC domain protein dehydratase |
|---|
| Protein accession | YP_002945337 |
|---|
| Protein GI | 239816427 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCAC TCCCTGACGA CACGGGCGCC AAGCGCGCGC TTTACCTCGA AGACCTGTCG
GTCGGCGACC GCTTCCAGAG CGGCGAACAT GCGCTGGATG TGGCGCAGAT CAAGGCCTTT
GCATCGCAGT TCGATCCGCA GCCCTTCCAT ACCGATGAAG AGGCCGCGAA GACCACCTTC
TTCGGCGGCC TTGCGGCCAG CGGCTGGCAC ACGGCGGCGC TCACCATGAA GCTGATGGTG
GAAAGCGGCA TTCCGCTGGC CGAAGGCATC ATCGGCTCGG GCGGCGAGCT GCAGTGGCCC
AAGCCGACGC GGCCCGGCGA CGTGCTGCAC GTGGTGAGCG AGGTGCTCGA CATCACGCCC
TCGCGCTCCA AGCCAGGCCG CGCGATGGTC ACGATGCGCT GCCGCACGCT CAACCAGCGC
GGCGAGGTGC TCCAGTACTT CACGCCCAAG CTGGTCGTGC ACGCCCGGCC CGCGTAG
|
|---|
| Protein sequence | MAALPDDTGA KRALYLEDLS VGDRFQSGEH ALDVAQIKAF ASQFDPQPFH TDEEAAKTTF
FGGLAASGWH TAALTMKLMV ESGIPLAEGI IGSGGELQWP KPTRPGDVLH VVSEVLDITP
SRSKPGRAMV TMRCRTLNQR GEVLQYFTPK LVVHARPA
|
|---|
| |