| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3433 |
|---|
| Symbol | |
|---|
| ID | 7972544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3621975 |
|---|
| End bp | 3623069 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794017 |
|---|
| Product | NlpBDapX family lipoprotein |
|---|
| Protein accession | YP_002945316 |
|---|
| Protein GI | 239816406 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3317] Uncharacterized lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGAACC TTTCGCACAT TTCGCGAGCT GCATTGCTGG CCACCCTCGT TGTCAGCCTC
GCCGCCTGCT CCGTTCTCGA GAGCGACAAG ATCGACTACA AGAGCGCCGG CAAGGCCCCG
ACGCTCGAAG TCCCGCCCGA CCTGTCGCAG CTCTCGCGCG AGAACCGCTA TGCGGTGCCG
GGCGGTGCGG TCACGGCCAA CGCCTACCAG GCCGGTGCCG CCAATGCGCC GGGCATTCCC
ACCGCGGTGG CCAACATCGG CGACGTGCGC ATGGAGCGCT CGGGCACGCA GCGCTGGATC
GTCATCAACC GCTCGCCCGA CCAGCTCTGG GATCCGGTGA AGGACTTCTG GCAGGAAAGC
GGCTTCCTCC TGACCACCGA GCAGCGCAAC CTCGGCATCA TGGAAACCGA CTGGGCCGAG
AACCGCGCCA AGCTGCCGCA GGACATCATC CGCGGCACGC TGGGCAAGCT GGTCGACTCG
GTCTACTCGA CCGGCGAGCT CGACCGCTTC CGCACGCGCC TGGAGCGCAC GCCCACGGGC
ACCGAGATCT TCATCAGCCA CCGCGGCATG CAGGAGGTCT ACAACAACAG CCGCCAGGAC
CAGACCGTGT GGCAGCCGCG TCCGAGCGAT CCTGAGCTCG AGACCGAGTT CCTGCGCCGC
CTGATGGTCA AGCTCGGCGT GACGCAAGAG CAGTCGAAGA TCCTGGCCGC CACCACGGCG
CCCTCCAAGA CCGCGACCGT CGCCAACGTG AGCGGCCAGC CGGTCGTGCA GATCAACGAA
GGTTTCGACC GCGCATGGCG CCGCGTGGGC CTGGCGCTCG ACCGCACCGG CTTCACCGTG
GAGGACCGCG ACCGCAGCGC CGGCATCTAC TACGTGCGCT ACGTGACCCC GAACCCCGAC
AAGAAGGAGC CCGGCTTCTT CGGCAAGCTG TTCGGCAGCT CCGAGAAGAA CGAAGCACCG
ATCAAGTTCC GCATCCTCGT GAAGGGCGGC CAGGGCGAGA GCACCACGGT CTCGGTGCTG
AACGCGAACG GCGCGCCCGA AACCTCGGCG AACGCGCAGC GCATCGTCCA GGTCATCGCC
GACGACCTGA AGTAA
|
|---|
| Protein sequence | MKNLSHISRA ALLATLVVSL AACSVLESDK IDYKSAGKAP TLEVPPDLSQ LSRENRYAVP
GGAVTANAYQ AGAANAPGIP TAVANIGDVR MERSGTQRWI VINRSPDQLW DPVKDFWQES
GFLLTTEQRN LGIMETDWAE NRAKLPQDII RGTLGKLVDS VYSTGELDRF RTRLERTPTG
TEIFISHRGM QEVYNNSRQD QTVWQPRPSD PELETEFLRR LMVKLGVTQE QSKILAATTA
PSKTATVANV SGQPVVQINE GFDRAWRRVG LALDRTGFTV EDRDRSAGIY YVRYVTPNPD
KKEPGFFGKL FGSSEKNEAP IKFRILVKGG QGESTTVSVL NANGAPETSA NAQRIVQVIA
DDLK
|
|---|
| |