| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3391 |
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| Symbol | |
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| ID | 7970629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3570483 |
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| End bp | 3572216 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793975 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_002945274 |
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| Protein GI | 239816364 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.285234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATGC GCTACACGGC ATTGGCACTG GCAGCGGCGA TGTTCGCCGC GCACGGTGCG
GCATCGGCGG GCGAGGCCGA AGCCAAGAAA TGGATCGACA GCGAATTCCA GCCATCGACC
TTGTCCAAGG ACAAGCAGAT GGAAGAAATG AAATGGTTCA TCGAAGCCGC CAAGAAGCTT
CAGGCCAAGG GCGTGAAAGA GGTGTCCGTC GTCTCCGAAA CGCTGACCAC CCACGAGTAC
GAATCGAAGA CGCTGGCCAA GGCCTTCGAG GAAATCACCG GCATCAAGGT CAAGCACGAC
CTGATCCAGG AAGGCGACGT GGTCGAGAAG CTGCAGACCT CCATGCAGTC GGGCAAGTCG
ATCTACGACG GCTGGGTGTC CGACTCCGAC CTGATCGGCA CGCACTACCG CTACGGCAAG
ATCATGTCGC TGACCGAGTA CATGGGCGGT GCGGGCAAGG AGTACACCAA CCCCGGCCTC
GACCTGAAGG ACTTCATCGG CACCAGCTTC ACCACCGCGC CCGACGGCCA GCTCTACCAG
CTGCCAGACC AGCAGTTCGC CAACCTCTAC TGGTTCCGCG CCGACCTGTT CGCGCGCAAG
GACCTGCAGG ACAAGTTCAA GGCCAAGTAC GGCTACGACC TGGGCGTGCC GCTCAACTGG
AGCGCCTACG AGGACATCGC CGAGTTCTTC AGCGTCGACG TGAAGAACAT CGACGGCAAG
CCGATCTACG GCCACATGGA CTACGGCAAG AAGGACCCGT CGCTGGGCTG GCGCTTCACC
GATGCGTGGC TCTCGATGGC GGGCGCCGCC GACAAGGGCA TTCCCAACGG CATGCCGATC
GACGAATGGG GCATCCGCGT GGCCGCGGAC AAGTGCACGC CCACGGGCGC GGCCGTCTCG
CGCGGCGGCG CCACCAACTC GCCAGCTGCC GTGTACGCGC TCACCAAGTA CATCGACTGG
ATGAAGAAGT ACGCGCCCAA GGAAGCCATG GGCATGACCT TCGGCGAATC GGGCCCGGTG
CCGGCGCAGG GCCAGATCGC CCAGCAGATC TTCTGGTACA CGGCCTTCAC GGCCGACATG
ACCAAGAAGG GCCTGCCGGT CGTGAACGAA GACGGCTCGC CCAAGTGGCG CATGGCCCCC
GGCCCGAACG GCCCGTACTG GAAGCAGGGC ATGCAGAACG GCTACCAGGA CGTGGGCTCG
TGGACCTTCT TCAAGGGCCA TGACGCCAAC AAGACGGCGG CGGCCTGGCT CTACGCGCAG
TTCATCACCG CCAAGACCAC GTCGCTGAAG AAGTCGATCA CCGGCCTGAC CTTCATCCGC
GACAGCGACA TCCGTTCGGA CTTCTTCACC CAGAACGCCA ACAAGTACGG CGGCCTGATC
GAGTTCTACC GCAGCCCGGC GCGCGTGGCC TGGACGCCCA CCGGCACCAA CGTGCCCGAC
TACCCGAAGC TCGCGCAGCT CTGGTGGAAG AACGTGGCCG AGGCCGTCAC GGGCGAGAAG
ACCCCGCAGA AGGCCATGGA CAACCTGGCC GACGAGATGG ACAACGTGAT GGCCCGCCTC
GAGCGCGCCG GCATGGCCAA GTGCGCGCCC AAGCTCAACC CGAAGGGCGA CCCGGCCAAG
TACCTGAGCG ACGACCACGC GCCCTGGAAG AAGCTGGCCA ACGAGAAGCC CAAGGGCGAG
ACCATCGACT ACAACAAGCT GCTGACGGCC TGGAAGGAAG GCAAGGTGCG CTGA
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| Protein sequence | MKMRYTALAL AAAMFAAHGA ASAGEAEAKK WIDSEFQPST LSKDKQMEEM KWFIEAAKKL
QAKGVKEVSV VSETLTTHEY ESKTLAKAFE EITGIKVKHD LIQEGDVVEK LQTSMQSGKS
IYDGWVSDSD LIGTHYRYGK IMSLTEYMGG AGKEYTNPGL DLKDFIGTSF TTAPDGQLYQ
LPDQQFANLY WFRADLFARK DLQDKFKAKY GYDLGVPLNW SAYEDIAEFF SVDVKNIDGK
PIYGHMDYGK KDPSLGWRFT DAWLSMAGAA DKGIPNGMPI DEWGIRVAAD KCTPTGAAVS
RGGATNSPAA VYALTKYIDW MKKYAPKEAM GMTFGESGPV PAQGQIAQQI FWYTAFTADM
TKKGLPVVNE DGSPKWRMAP GPNGPYWKQG MQNGYQDVGS WTFFKGHDAN KTAAAWLYAQ
FITAKTTSLK KSITGLTFIR DSDIRSDFFT QNANKYGGLI EFYRSPARVA WTPTGTNVPD
YPKLAQLWWK NVAEAVTGEK TPQKAMDNLA DEMDNVMARL ERAGMAKCAP KLNPKGDPAK
YLSDDHAPWK KLANEKPKGE TIDYNKLLTA WKEGKVR
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