| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3380 |
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| Symbol | |
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| ID | 7970618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3560822 |
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| End bp | 3561913 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793964 |
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| Product | lytic murein transglycosylase B |
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| Protein accession | YP_002945263 |
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| Protein GI | 239816353 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
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| TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0518683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATTTT TTCTTCCCGC GCCGCGCCGC GCCGCCGCCG TCGCCCTCCT CGCCGCCTGC
TGCGCAGGGT CCATCGGGGC GCAGGCCCAG AAAGCTCCCA GCGCCCGCAG CGTGAAAACC
GTGGCCGGCA GCACGCCCTA CGCCACGCGC GACGACGCCA TGCGCTTTGC CGACGAGGTG
GCCGAGCGCC GCGGCCTCGA CCGCGAATGG GTGCGCGCCA CCATCGGCAG CGCGCGCTTT
TTGCCCAACG TGCCGCGCCT GATGCTGCCC GGCCCGGCCG GCACGGTGAA GAACTGGCAG
GCCTACCGCA GCCGCTTCAT CGATGCGACG CGCATTGCCG CTGGCGTGCG CTTCTGGCGC
AACAACGCCG GCACGCTCGC GCGCGCGGAG GCGATGTATG GCGTGCCGGC CGAAATCATC
GTGGGCATCG TCGGCGTGGA GACCATCTAC GGCCGCAACA TGGGCAGCTT CCGCGTGATC
GATGCACTGG CCACGCTGTC GTTCGACTTT CCGCAGGCCC ATCCGCGCGC GGCCGAGCGC
GAGGCCTTCT TCCGCGGCGA GCTCGAGAGC TTTCTGAGCA CCGAAAGCCG CACCGCCGAC
AACCCCCTGC TGCCCGTGGG CAGCTATGCG GGCGCCATGG GCATGCCGCA GTTCATGCCC
AGCAGCATCG CCAAGTACGC GGTCGACTTC GACGGCGACG GCCGCATCGA CCTCGTCGAC
AACCCCGCCG ACGTGATCGG CTCGGTGGCC AACTACTTCA AGGCCTTCGG CTGGACGCCC
GGCATGCCCG CGACCTACCC GGTGCACTTC GAGGAGGCCC GCCTCAAGAA GGCGCTGCTG
CTGGCGCCCG ACATCCTGCC GAGCTTCAGC ACCGACAGCT TCGTGGCGGC CGGAGCCGTT
CCCGAAGGCG AGGGCCTGCG CCACAAGGGC CTGCTCGCGC TGATCGAACT GCAGAACGGC
GCCGACGCAG AGCCGACCTA CGTGGCCGGC ACGCGCAACT TCTACGTGAT CACGCGCTAC
AACTGGAGCA GCTACTACGC GATGTCGGTG CTCGACCTCG GCCGGGAGGT CAAGGCCGCC
ATGGAGCCAT AG
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| Protein sequence | MRFFLPAPRR AAAVALLAAC CAGSIGAQAQ KAPSARSVKT VAGSTPYATR DDAMRFADEV
AERRGLDREW VRATIGSARF LPNVPRLMLP GPAGTVKNWQ AYRSRFIDAT RIAAGVRFWR
NNAGTLARAE AMYGVPAEII VGIVGVETIY GRNMGSFRVI DALATLSFDF PQAHPRAAER
EAFFRGELES FLSTESRTAD NPLLPVGSYA GAMGMPQFMP SSIAKYAVDF DGDGRIDLVD
NPADVIGSVA NYFKAFGWTP GMPATYPVHF EEARLKKALL LAPDILPSFS TDSFVAAGAV
PEGEGLRHKG LLALIELQNG ADAEPTYVAG TRNFYVITRY NWSSYYAMSV LDLGREVKAA
MEP
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