Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3375 |
Symbol | |
ID | 7970613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3554424 |
End bp | 3555704 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793959 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_002945258 |
Protein GI | 239816348 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.126679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTCA ACGATTTCAC ACAACGCCTG GGCCAGGTCG ACGCACGCGG CCTGGGCATC GAGCTGGCGG CACTGGTCGC CTGCGTGGTC CTGGCCTGGG TGGCCACCCG CTGGTTCGGG CGCGACCAGC CGAAGGATTC CATCTGGTTC GGCGAGCGCA CCTTCGACGG GCTCTTGTTC CCGCTGCTGG CGCTGGTCTT CGCCGAGCTG GCCCGGCGCC TGGTGAGCGG CTACCAGCCC GTACTGGTGC TGCGCATCGG GGTGTCGGTG TTCCTGTCGC TGGCGGTCAT CCGGCTGTTC GCGCGCGTGA TGCGGGCGGT CTTTCCCGCC TCCAACCTGG TGCGGCTGCT GGAGCGCACG ATCTCGTGGC TCGCCTGGAT GGCCGCCATC CTCTGGATCG TCGGGCTGCT GCCGCCGGTG CTGGCCGAGC TCGACGGCAT CACGCTGGCC TTCGGCAAGA CGAGCGTCAG CCTGCAGACC ATCATCCAGG GCGTGCTGTC GGCCGGGCTG GTGCTGGTGA TCGCGCTGTG GATTGCCGCC ACCATCGAGA AGCGCATCCT GCGCGAGGCC GTGACCGACC TGTCGATGCG CAAGGTGGCC TCGAACGCGG TGCGCGCCAT CCTGCTGCTG GTGGGCCTGC TGTTCGCGCT GTCGGCGGTG GGGGTCGACC TGACGGCGCT CTCGGTGCTG GGCGGCGCGC TGGGCGTAGG CCTGGGCTTC GGGCTGCAGA AGCTGGCGGC CAACTACGTG AGCGGCTTCG TGATCTTGCT GGAGCGCTCC ATCCGCATCG GCGACAACGT CAAGGTCGAC ACCTTCGAGG GCCGCATCAC CGACATCAAG ACCCGCTACA CGCTCATCCG CGCGGGCAAC GGGCGCGAGG CCATCGTGCC GAACGAGTCG CTCATTACCA GCCGCGTCGA GAACCTCTCG ATGGCGGACC GCAAGTTCAA CATCACGACC AGCATCGTGG TGGGCTACGA CAGCGACGTG GCGCAGGTGC AGGCCATCCT GTGCGCGGCG GCCAAGGCCC AGGCCCGGGT GATGACCGAC CCCGAGCCCG TGACTTATCT CGCCAGCTTC GCGCCCGACG GGCTGGAGTT CACGCTGAAC TTCTGGGTGG CCGACCCTGA CAAGGGCAAG GACAACGTGC GCTCGGCCAT CAACATCGCC ATTCTCGAGG GCCTGCGCAG CGCGGGCGTG GACATTCCCT ATCCGCAGCG CGTGCTGCGG GTGGAGTCGC TGCCGCCGGG CGTTTCCGCC ACGCGCGAGG CTGCCGTATA A
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Protein sequence | MNFNDFTQRL GQVDARGLGI ELAALVACVV LAWVATRWFG RDQPKDSIWF GERTFDGLLF PLLALVFAEL ARRLVSGYQP VLVLRIGVSV FLSLAVIRLF ARVMRAVFPA SNLVRLLERT ISWLAWMAAI LWIVGLLPPV LAELDGITLA FGKTSVSLQT IIQGVLSAGL VLVIALWIAA TIEKRILREA VTDLSMRKVA SNAVRAILLL VGLLFALSAV GVDLTALSVL GGALGVGLGF GLQKLAANYV SGFVILLERS IRIGDNVKVD TFEGRITDIK TRYTLIRAGN GREAIVPNES LITSRVENLS MADRKFNITT SIVVGYDSDV AQVQAILCAA AKAQARVMTD PEPVTYLASF APDGLEFTLN FWVADPDKGK DNVRSAINIA ILEGLRSAGV DIPYPQRVLR VESLPPGVSA TREAAV
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