Gene Vapar_3375 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3375 
Symbol 
ID7970613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3554424 
End bp3555704 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content68% 
IMG OID644793959 
ProductMscS Mechanosensitive ion channel 
Protein accessionYP_002945258 
Protein GI239816348 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3264] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.126679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTCA ACGATTTCAC ACAACGCCTG GGCCAGGTCG ACGCACGCGG CCTGGGCATC 
GAGCTGGCGG CACTGGTCGC CTGCGTGGTC CTGGCCTGGG TGGCCACCCG CTGGTTCGGG
CGCGACCAGC CGAAGGATTC CATCTGGTTC GGCGAGCGCA CCTTCGACGG GCTCTTGTTC
CCGCTGCTGG CGCTGGTCTT CGCCGAGCTG GCCCGGCGCC TGGTGAGCGG CTACCAGCCC
GTACTGGTGC TGCGCATCGG GGTGTCGGTG TTCCTGTCGC TGGCGGTCAT CCGGCTGTTC
GCGCGCGTGA TGCGGGCGGT CTTTCCCGCC TCCAACCTGG TGCGGCTGCT GGAGCGCACG
ATCTCGTGGC TCGCCTGGAT GGCCGCCATC CTCTGGATCG TCGGGCTGCT GCCGCCGGTG
CTGGCCGAGC TCGACGGCAT CACGCTGGCC TTCGGCAAGA CGAGCGTCAG CCTGCAGACC
ATCATCCAGG GCGTGCTGTC GGCCGGGCTG GTGCTGGTGA TCGCGCTGTG GATTGCCGCC
ACCATCGAGA AGCGCATCCT GCGCGAGGCC GTGACCGACC TGTCGATGCG CAAGGTGGCC
TCGAACGCGG TGCGCGCCAT CCTGCTGCTG GTGGGCCTGC TGTTCGCGCT GTCGGCGGTG
GGGGTCGACC TGACGGCGCT CTCGGTGCTG GGCGGCGCGC TGGGCGTAGG CCTGGGCTTC
GGGCTGCAGA AGCTGGCGGC CAACTACGTG AGCGGCTTCG TGATCTTGCT GGAGCGCTCC
ATCCGCATCG GCGACAACGT CAAGGTCGAC ACCTTCGAGG GCCGCATCAC CGACATCAAG
ACCCGCTACA CGCTCATCCG CGCGGGCAAC GGGCGCGAGG CCATCGTGCC GAACGAGTCG
CTCATTACCA GCCGCGTCGA GAACCTCTCG ATGGCGGACC GCAAGTTCAA CATCACGACC
AGCATCGTGG TGGGCTACGA CAGCGACGTG GCGCAGGTGC AGGCCATCCT GTGCGCGGCG
GCCAAGGCCC AGGCCCGGGT GATGACCGAC CCCGAGCCCG TGACTTATCT CGCCAGCTTC
GCGCCCGACG GGCTGGAGTT CACGCTGAAC TTCTGGGTGG CCGACCCTGA CAAGGGCAAG
GACAACGTGC GCTCGGCCAT CAACATCGCC ATTCTCGAGG GCCTGCGCAG CGCGGGCGTG
GACATTCCCT ATCCGCAGCG CGTGCTGCGG GTGGAGTCGC TGCCGCCGGG CGTTTCCGCC
ACGCGCGAGG CTGCCGTATA A
 
Protein sequence
MNFNDFTQRL GQVDARGLGI ELAALVACVV LAWVATRWFG RDQPKDSIWF GERTFDGLLF 
PLLALVFAEL ARRLVSGYQP VLVLRIGVSV FLSLAVIRLF ARVMRAVFPA SNLVRLLERT
ISWLAWMAAI LWIVGLLPPV LAELDGITLA FGKTSVSLQT IIQGVLSAGL VLVIALWIAA
TIEKRILREA VTDLSMRKVA SNAVRAILLL VGLLFALSAV GVDLTALSVL GGALGVGLGF
GLQKLAANYV SGFVILLERS IRIGDNVKVD TFEGRITDIK TRYTLIRAGN GREAIVPNES
LITSRVENLS MADRKFNITT SIVVGYDSDV AQVQAILCAA AKAQARVMTD PEPVTYLASF
APDGLEFTLN FWVADPDKGK DNVRSAINIA ILEGLRSAGV DIPYPQRVLR VESLPPGVSA
TREAAV