| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3372 |
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| Symbol | |
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| ID | 7970610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3550724 |
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| End bp | 3552514 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793956 |
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| Product | acyl-CoA dehydrogenase domain protein |
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| Protein accession | YP_002945255 |
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| Protein GI | 239816345 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.272289 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTACA CCGCCCCCCT CAAGGACATG CTGTTCGACA TCGAGCACCT GGCCAACATC
GGCGAGATCG CCAGGCTGCC GGGCTTCGAG GACGCCGGCC TCGAAACCGC GCAGGCCGTG
CTCGAGGAAT GCGCGCGCTT CAACCAGGAC GTGGTCGCGC CGCTGAACAT CGAGGGCGAC
CGCAACCCCT CGTCCTTCAA GGACGGCCAG GTCGCGACCA CGCCGGGCTT CAAGGAAGCC
TTCGCGCAGT ACGTGTCGGG CGGCTGGCAG GGCCTGCAGC ATCCGGCGGA CTTCGGCGGC
CAGGGCCTGC CCAAGACCAT CGGCGCGGCC TGCGGCGAAA TGCTCAACTC GGCCAACATG
AGCTTCGCGC TGTGCCCGCT CTTGAGCGAC GGCGCCATCG AGGCGCTGCT CACGGCCGGC
TCCGACGAGC TCAAGGCGGT GTACCTCGAA AAGCTCGTGA GCGGCCAGTG GACCGGCACC
ATGAACCTCA CCGAGCCGCA GGCCGGCAGC GACCTTGCGC TGGTGCGCAG CCGCGCCGAA
CCGCAGCCCG ACGGCACCTA CAAGGTCTTC GGCACCAAGA TCTTCATCAC CTACGGCGAG
CACGACATGG CCGAGAACAT CGTGCACCTG GTGCTCGCAC GCGTGACCGG CGCGCCCGAA
GGCGTGAAGG GCATCAGCCT GTTCGTGGTG CCCAAGTTCC TCGTCGGCAA GGACGGGTCG
CTGGGTGCGC GCAACGACGT GCACTGCGTG AGCATCGAGC ACAAGATGGG CATCAAGGCC
TCGCCCACCG CCGTGCTGCA GTACGGCGAC CATGGCGGTG CCGTGGGTTA TCTCGTCGGC
CAGGAGAACC GCGGCCTCGA GTACATGTTC ATCATGATGA ACTCGGCCCG CTATGCCGTG
GGCATGCAGG GCATCGCGAT TGCCGAGCGC GCCTACCAGC ACGCCGTGGC CTACGCCAAG
GACCGCGTGC AGAGCCGCCC GGTCGATGGT TCGATGAACG CGAGCGCGCC CATCATCCAC
CACCCCGACG TCAAGCGCAT GCTGATGACG ATGCGCGCCT ACACCGAAGG CTGCCGCGCC
ATGGCCTCGG TGGCCGCGGC CGCGTACGAC GCCGCGCACC ACCACCCCGA TGCCGAGGCG
CGCAAGCAGA ACCAGGCCTT CTACGAATTC ATGGTGCCGC TCGTGAAGGG CTACAGCACC
GAGATGAGCC TGGAAGTGAC CTCGCTGGGC GTGCAGGTGC ATGGCGGCAT GGGCTTCATC
GAGGAGACCG GTGCGGCGCA GTACTACCGC GACGCCAAGA TCCTCACGAT CTACGAGGGC
ACCACCGCCA TCCAGGCCAA CGACCTCGTG GGCCGCAAGA CCGCGCGCGA CGGCGGCCAG
ACCGCCAAGG CCATTGCCGC GCAGATCGAG AAGACCGAAG CCGAGCTGTC CAAGAGCGGC
AGCCCCGCCG CGGCCGCCGT CCTCAAGCGC CTGAAGCCTG CGCGCGAAGC CTTCATCGAA
GTGGTCGACT TCGTCGCGGG CCAGACCAAG GCGTCGCCCA ACGCGGTGTT CGCGGGCAGC
GTGCCCTACC TGATGCTCGC GGGCAACCTC GTGGCCGGCT GGCAGCTGGC GCGCTCGCTG
ATCATTGCAG CGGACCTGGC GTCGCGCAGT GTCGACGTGG ACTTCATGCA GGCCAAGATC
GCGACCGCGC GCTTCTATGC CGAGCACATC CTGAACAGGG TGCCCGGGCT GCGCGACAGC
ATCGTCGATG GCGCCGAGAG CGTCACGGCA CTGGCGCTCG ACGCCTTCTG A
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| Protein sequence | MSYTAPLKDM LFDIEHLANI GEIARLPGFE DAGLETAQAV LEECARFNQD VVAPLNIEGD
RNPSSFKDGQ VATTPGFKEA FAQYVSGGWQ GLQHPADFGG QGLPKTIGAA CGEMLNSANM
SFALCPLLSD GAIEALLTAG SDELKAVYLE KLVSGQWTGT MNLTEPQAGS DLALVRSRAE
PQPDGTYKVF GTKIFITYGE HDMAENIVHL VLARVTGAPE GVKGISLFVV PKFLVGKDGS
LGARNDVHCV SIEHKMGIKA SPTAVLQYGD HGGAVGYLVG QENRGLEYMF IMMNSARYAV
GMQGIAIAER AYQHAVAYAK DRVQSRPVDG SMNASAPIIH HPDVKRMLMT MRAYTEGCRA
MASVAAAAYD AAHHHPDAEA RKQNQAFYEF MVPLVKGYST EMSLEVTSLG VQVHGGMGFI
EETGAAQYYR DAKILTIYEG TTAIQANDLV GRKTARDGGQ TAKAIAAQIE KTEAELSKSG
SPAAAAVLKR LKPAREAFIE VVDFVAGQTK ASPNAVFAGS VPYLMLAGNL VAGWQLARSL
IIAADLASRS VDVDFMQAKI ATARFYAEHI LNRVPGLRDS IVDGAESVTA LALDAF
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