| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3345 |
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| Symbol | |
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| ID | 7970583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3524612 |
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| End bp | 3525733 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793930 |
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| Product | putative sugar ABC transporter, substrate-binding protein |
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| Protein accession | YP_002945229 |
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| Protein GI | 239816319 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.643163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGA AGAGTGTGGT TCCCGCGCGC ACCGTCGCCG CCGCCGTGCT GGCGCTGTGC
GCCGCCGCGC TGGCGCCCAA GGCGATGGCC GACGACTTCC TGGATGCCGC GAAGAAGAAG
GTCGAGATCG CCACCATGAC CAAGGAGAAG TGGGACGGCC CCACCACCGG CCCCAAGGCC
GCCGCGGGCA AGACCATCGT CTTCGTCGCG GGCGACATGA AGAACGGCGG CATCGTGGGC
GTGAGCAAGG GCGTGGAGGA AGCGGCGCGC GCCATCGGCT GGACGGTGCG CGTCATCGAC
GGCCAGGGCA CGGTCAGCGG GCGCACCGCG GCACTCAACC AGGCGCTGGC CGTGAAGCCC
GCGGGCATCG TGGTCGGCGG CTTCGACACC ACCGAGCAGA AGGCGGCGTT CTCGGGCGCG
GCCAAGTCGG GCATTCCTCT GGTCGGCTGG CATTCGGGCG AGCAGCCGGG CCCGAACGAC
AAGGCGGGCC TCTTCGCCAA CGTGACCACC GTGACAGACG ACGTGGCCGA CGTCGCCGCC
TCGTGGGTGG TGGCCGATTC GGGCGGCAAG GCGGGCGTGG TGATCTTCAC CGACTCGCAG
TACGCGATTG CGCTCTACAA GGCGCGCGCG ATGGAGGCCG TCATCAAGAA GTGCGGCGGC
TGCACCGTGC TGAGCTTCGA GGACAGCCCG ATCTCCGAAA GCTCGACCCG CATGCCGCAG
CTCACCACCT CGCTGCTGCA GCGCTTTGGC GACAAGTGGA CGCACTCGCT GGCCATCAAC
GACCTGTACT TCGACTTCAT GGGCCCCTCG CTCACCGCGG CGGGCAAGAA GGGCGACGGA
TCGCCCAAGG CGGTGTCGGC CGGCGACGGC TCCGAGGCCG CCTACCAGCG CATCCGCACG
CAGCGCTACC AGGCCGGCAC GGTGCCCGAG CCGCTCAACA TGCAGGGCTG GCAGATCGTC
GACGAGCTCA ACCGCGCCTT CGCCAAGGAG AAGTGGTCGG GCTACGTGCC CAAGGTGCAC
CTGGTGACGG CGGGCAACGT GGGCAAGGAC GGCGGGCCGA AGAATGTGTT CGATCCGGAC
AACGGCTATC GGACGCAGTA CAAGGCTCTG TGGGGCAAGT AG
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| Protein sequence | MKKKSVVPAR TVAAAVLALC AAALAPKAMA DDFLDAAKKK VEIATMTKEK WDGPTTGPKA
AAGKTIVFVA GDMKNGGIVG VSKGVEEAAR AIGWTVRVID GQGTVSGRTA ALNQALAVKP
AGIVVGGFDT TEQKAAFSGA AKSGIPLVGW HSGEQPGPND KAGLFANVTT VTDDVADVAA
SWVVADSGGK AGVVIFTDSQ YAIALYKARA MEAVIKKCGG CTVLSFEDSP ISESSTRMPQ
LTTSLLQRFG DKWTHSLAIN DLYFDFMGPS LTAAGKKGDG SPKAVSAGDG SEAAYQRIRT
QRYQAGTVPE PLNMQGWQIV DELNRAFAKE KWSGYVPKVH LVTAGNVGKD GGPKNVFDPD
NGYRTQYKAL WGK
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