| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3343 |
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| Symbol | |
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| ID | 7970581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3521978 |
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| End bp | 3523495 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793928 |
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| Product | ABC transporter related |
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| Protein accession | YP_002945227 |
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| Protein GI | 239816317 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.589852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGC CCCTCCTGCA ATTCCAGTCC CTCTGCAAAC GCTTCGGCGG CACGCAGGCC
GTGGACCACG TGACGCTCGA TGTGCGCGCC GGCGAAATCC TCGCGCTGCT CGGCGAGAAC
GGCGCGGGCA AATCCACGCT CATCAAGCTG CTCGCGGGCA TCTATCCCGC GGACCAGGGC
GAGATTCTTT TCGACGGCCA GCCGCAAGCC GCCTGGCGGC GCACCGACCG ACGCGAGCAA
CCCGTCGCCT TCATTCACCA GGACCTGGGC CTTGTCGAAT GGATGACCGT GGCCGAGAAC
GTGTGCCTCG GCACCGGCTA CCCGCGCCGC TTCGGCCTCA TCGACTGGTC CGCCGCGAAC
GACACCGCAC GCCGCGTGAT GGCGCGCGTG GGCTGCGACA TCGATCCCGG CCGCCGCGTG
TTCTCGCTCA CGCGGGCCGA GAAATCGTTG CTCGCCATCG GCCGTGCGCT CGAAGTCAAG
GCGCGCCTGC TGGTGCTCGA CGAGCCCTCG GCCAGCCTTC CGATGAGCGA CGTGGAGCGC
ATGTTCGGCG TGCTGCGCGA ACTGCGCCGG CAGGGCATGG CGATGCTCTA CGTGTCGCAC
CGGCTCGACG AAGTGATGGC CATCTCCGAC CGCGCAGCCG TGATGCGCGA CGGCAAGCTG
GTGGCGGTGA AGACCACGGC GCACACCAAC GAAGGCGAGC TGGTCGGGCT GATCGTCGGC
AAGGCGCTCT CGGCCTCGGT GCCCAAGGCG AGCGTTCCGG CAGCAAGCGT GCCGGTGCTG
CAGCTGGACG GCGCGGCCAG CGGCAATGCC GGCCCGCTGA GCCTCTCTGT GCACCGCGGC
GAAGTGCTGG GCCTCGTCGG CCTGCGCGGC GCGGGGCACG AGGCCATCAG CCGCGCGATC
TTCGGGCGCG AGCCCTTGTC GGCCGGCCGC ATGCGGCTGC TCGGCAAGGA ATGCGATTTC
ACCTGCCCCG CCGATGCCAT TCGCGCGGGC GTGGCCTATG TCGCCGGCGA ACGCCTTGAA
GAAAACCTCG CCGGCTCGAT GACGGTGCTG GAGAACCTGT TCCCCAACGC CGCGCTGCAT
GGCGATCGCG GCCTGGCCTT CGATCGTCCG CGCCGCGAGA ACGACAGCGC GCTCGCATTG
ATCCGCCGGT TCGACATCAA CCCGCCCGCG CCGTCGGCCG AGGTGCAGCA GCTTTCGGGC
GGCAACCAGC AGAAGGTGGT GCTGGCGCGC TGGTTCCACC TGGGCAAGCC GCTCGTGGTG
CTCGAAGAGC CCACGGCCGG CGTCGATGTC GGCGCCAAGC GGCAGATCTA CGGCGTGCTG
CGCGAGCGCG CGGAGGCCGG CACCGCGCTG GTGGTGGTCT CCACCGACTT CGAGGAAATC
GCGACCGTGT GCACCCGCGT GCTCGTCTTC CGCGACGGGC TGATCGCCGC CGAATTGACG
GGCGATGCGA TCACGGTGGA AAAACTTTTG GCATTGGCAG CAGGCGCCGC CGTGGCGCAC
GAGGAAATTT CCGCATGA
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| Protein sequence | MSAPLLQFQS LCKRFGGTQA VDHVTLDVRA GEILALLGEN GAGKSTLIKL LAGIYPADQG
EILFDGQPQA AWRRTDRREQ PVAFIHQDLG LVEWMTVAEN VCLGTGYPRR FGLIDWSAAN
DTARRVMARV GCDIDPGRRV FSLTRAEKSL LAIGRALEVK ARLLVLDEPS ASLPMSDVER
MFGVLRELRR QGMAMLYVSH RLDEVMAISD RAAVMRDGKL VAVKTTAHTN EGELVGLIVG
KALSASVPKA SVPAASVPVL QLDGAASGNA GPLSLSVHRG EVLGLVGLRG AGHEAISRAI
FGREPLSAGR MRLLGKECDF TCPADAIRAG VAYVAGERLE ENLAGSMTVL ENLFPNAALH
GDRGLAFDRP RRENDSALAL IRRFDINPPA PSAEVQQLSG GNQQKVVLAR WFHLGKPLVV
LEEPTAGVDV GAKRQIYGVL RERAEAGTAL VVVSTDFEEI ATVCTRVLVF RDGLIAAELT
GDAITVEKLL ALAAGAAVAH EEISA
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