| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3320 |
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| Symbol | |
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| ID | 7970558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3499187 |
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| End bp | 3501079 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793905 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase |
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| Protein accession | YP_002945204 |
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| Protein GI | 239816294 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCGCT CCATTGCCAC CGTCTCCCTC AGCGGCACGC TTCGCCAGAA GCTCGAAGCC
GTTTCGGCCG CAGGCTTCGA CGGCATCGAG CTGTTCGAGG CCGACTTCGT CAACTTCAAG
GGCAGCGCCG CCGAGCTGGG CCGCATCGCC TCGGACCTCG GCCTCTCGAT CGACCTGTAC
CAGCCGTTCC GCGATTTCGA GGGCATGCCC GAGGCGCAGT TCCGCCGCAG CCTGGAGCGC
GCCGAGCGCA AGTTCGACCT GATGGAGGCC ATGGGCGCGC CGCTGATGCT GTGCTGCTCC
AACACCTCGC CGCCCTCGGT GAACGACCCG GCGCTGGCCG CCGCGCAGCT GCACGAGCTC
GCGGAACGCG CCGCGCGCCG CAACCTTCGC GTGGGCTTCG AGGCGCTGGC CTGGGGCCGC
CACACCTCGC TGTACGGCCA GGCCTGGAAC ATCGTGAAGC AGGCCGACCA CCCGCACCTT
GGTTTGATCC TCGACAGCTT CCACACGCTG TCGCTGAAGG ACGATGCCAC GGGCATTGCC
GCCATTCCGG GCGACAAGAT CTTCTTCCTG CAGATGGCCG ACGCGCCGCT GCTGTCGATG
GACGTGCTGC AGTGGGCGCG CCACCACCGC TCGTTCCCGG GGCAGGGCGA TCTCGACGTG
ATCGGCTTCT TCGAGCAGGT GCTGCGCGCG GGCTACACCG GCGCGCTGTC GCTGGAAATC
TTCAACGACC TGTTCCGCGA AACGCCCAAC CGGCGCACCG CGGTGGACGC CATGCGCTCG
CTGCTGTACC TCGAAAGCGA GGCGCGGCAG CGGCTGGCTT CCGCTGCCGA TGCGCCGGCA
CTGAAGCCGC AGGTCGAGCT GTTCAGCCCG CCGCCCGTGC CGGCGCTCTC GGGCCTGTCG
TTCATCGAAT TCGCGGCCGA CGAGGCCTCG GCCGGCACGC TCGGCGCGCT GCTGGAGCAG
CTCGGCTTCC GCCGCGTCGG CCGGCACCGC TCCAAGGCCG TGGCGCTGTA CCGCCAGGGC
GAAATCAACC TGATCGTCAA TGCGCAGCCG GATTCGTTCG CGCGCAGCCG CTTCGAGGCG
CACGGCACCT CGGTGTGCGC GCTGGGCGTG CGTTGCGCCG ATCCGCAGGC CGCGGTCGAG
CGCGCCACTG CCATGCGCTC GCAGCGCCAC GACAGCCCGG TCGGCCCGAA CGAATTGCGC
GTGCCGGCCA TCGTGGCGCC GGGCGGCAAC CTGATCCACT TCGTGCCCGA GGCCCTGGGC
ACCAACGGCC TGTACGAGGC CGACTTCATC CTCGAGCAAG ACGCCGCGGC CGATGTCCGC
GGCGCCGGGC TCGCGCAGGT CGACCACGTG GCGCTCGGCC TTGCGCTCGA CCAGCTCGAC
ACCTGGGTGC TGTTCACGCG CGCCGTGCTG GGGCTGGAGC CCGGCGAAAG CCTGGAGCTG
GCCGACCCCT TCGGCCTGAT CCGCAGCCGC GGCGTGGCCA ACGCCGATCG CAGCGTGCGG
CTGGTGCTCA ACGTGTCGCT GAGCCAGCGC ACCCGCACCG CGCGCACGCT GAGCCTGACC
GGCGGCGGCG CGGTGCACCA CATTGCGCTG CGCTGCGACG ACATCTTCGA GAGCGTGGCG
CGGCTGCGCG CCGCGGGCAC GCGCTTCGTG CCCATTTCGG ACAACTACTA CGACGACCTG
GCCACGCGCA TCGACCTGGA CCCTGTGCTG CTCGCAAAGC TGCGCGCCGC GGGCGTGCTG
TTCGACCGCT CCCCCACGGG CGACTACCTG CACATCTACA CCGAGAACAT CGAAGGCGGA
CTCTTCTTCG AACTGGCACA GCGCACCGCG GGCTACGACG CCTACGGCGC GCTCAACGCA
CCCGCGCGCA TGGCATCGCA GGCGCAGCAA TAA
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| Protein sequence | MHRSIATVSL SGTLRQKLEA VSAAGFDGIE LFEADFVNFK GSAAELGRIA SDLGLSIDLY
QPFRDFEGMP EAQFRRSLER AERKFDLMEA MGAPLMLCCS NTSPPSVNDP ALAAAQLHEL
AERAARRNLR VGFEALAWGR HTSLYGQAWN IVKQADHPHL GLILDSFHTL SLKDDATGIA
AIPGDKIFFL QMADAPLLSM DVLQWARHHR SFPGQGDLDV IGFFEQVLRA GYTGALSLEI
FNDLFRETPN RRTAVDAMRS LLYLESEARQ RLASAADAPA LKPQVELFSP PPVPALSGLS
FIEFAADEAS AGTLGALLEQ LGFRRVGRHR SKAVALYRQG EINLIVNAQP DSFARSRFEA
HGTSVCALGV RCADPQAAVE RATAMRSQRH DSPVGPNELR VPAIVAPGGN LIHFVPEALG
TNGLYEADFI LEQDAAADVR GAGLAQVDHV ALGLALDQLD TWVLFTRAVL GLEPGESLEL
ADPFGLIRSR GVANADRSVR LVLNVSLSQR TRTARTLSLT GGGAVHHIAL RCDDIFESVA
RLRAAGTRFV PISDNYYDDL ATRIDLDPVL LAKLRAAGVL FDRSPTGDYL HIYTENIEGG
LFFELAQRTA GYDAYGALNA PARMASQAQQ
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