Gene Vapar_3306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3306 
Symbol 
ID7973702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3484449 
End bp3485132 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content70% 
IMG OID644793891 
Producthypothetical protein 
Protein accessionYP_002945190 
Protein GI239816280 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.40361 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCCAC AACCGGATAT CGCCAAGACC GCACCGCAAG CCGCCTGGGG CCCCATTGCG 
CTCGCGCGCT TTCTGCACGG CGTGGTGGCG CTGGCCGCGG CCGGGGGAAT CGGCCTCGAG 
CTGAGCGCGG CGATCAGTGG CGGCCCCGGC ATCGCGCCCA CGCATCTGGA GCGCTTCGTT 
CGGCTGTTCA GCTACTTCAC CATCGATTCG AACCTGCTCG TCGGCGGCGT CTGCGCGCTG 
CTCGCCTTTC GTCCCGCGCA CGACGGGCGG CTGTTCCGGG TGCTGCGGCT CACGGCGGTG 
CTCTGCATCG CGGTCACGGG CATCGTGTTC CACACGGTGC TCACGGGGCT GCGCGAGCTC 
ACGCCCTCGG GGCAGCTTGC CAACTTCCTG CTTCACACGG TGACGCCGGT GTTCACGGTG 
CTCGGCTGGG CCCTGGTCGG ACCGCGGCCG CGCACCGACC GCGGCACCGT CGGGCGGGCC 
GTGCTGCTGC CGCTCGCATG GATCGTCTAC ACCTTCGTGC GCGGTGCGTT CGTGAGCTGG 
TACCCGTATC CGTTCATGGA CGTGGGCCAA CTCGGGTTTG CACGCGCAGC GCTCAATTCG 
GCGGCCGTCG CGGCTGTCTT CATCGCGATG GCCATCGGCC TGCGCCTGCT GGAGAAGCGG 
CTTCCCGCAG CGCCTGCCGG CTGA
 
Protein sequence
MPPQPDIAKT APQAAWGPIA LARFLHGVVA LAAAGGIGLE LSAAISGGPG IAPTHLERFV 
RLFSYFTIDS NLLVGGVCAL LAFRPAHDGR LFRVLRLTAV LCIAVTGIVF HTVLTGLREL 
TPSGQLANFL LHTVTPVFTV LGWALVGPRP RTDRGTVGRA VLLPLAWIVY TFVRGAFVSW 
YPYPFMDVGQ LGFARAALNS AAVAAVFIAM AIGLRLLEKR LPAAPAG