| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3251 |
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| Symbol | |
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| ID | 7973647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3426645 |
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| End bp | 3427937 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793836 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002945135 |
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| Protein GI | 239816225 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.104072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACTTCCT CTTCCCATCC ATCACCGCGC ACACGCCTCT TTCGCGGCTG GTTCGTGGTG
GCCGGCGCCT TCGCCGTCAC GCTCGTCGGC TTCGGCAGTG CCTACACCTT CAGCGCCTTC
CTCGAATCGC TGCAGCGCGA CTTCGGCGCC TCGCGCGGCT CGGCGTCGCT GGTGTTCTCG
CTTGCGGGCT TTCTCTACTT CGGGCTTGGC GTGGTCAGCG GCCCGCTCGC GGACCGGTGG
GGTGCGCGGC GGCTGTCGGT CGCGGGCATG GTGCTGGTCG GCCTGGGCCT GGCCGCCGCG
GGACAGGCGC GCAGCCTGGC CGAGGCTTGC CTGGCCTATG GCCTGGGCGT CGGGCTCGGC
ATCGGCGCCT CCTATGTGCC GGTGCTGGGC GCGGTGCAGC GCTGGTTCGT CAGGCGGCGC
GGATTCGCCT CGGGGCTGGC GGTGAGCGGC ATCGGCGTGG GCACGCTGGC GATGCCGCCG
CTGGCGTCGC TCCTCATCGA GGCGCTGGGG TGGCGCCACG CCTACCTGGC GCTGGGCGTG
CTGGCCGTGG TGGTGGGCGC CGGCATGGCG CTGCTGATCG AGGACGATCC GCGCCATCGC
GGGCTCGGGC CCGACGGCGA TCCGCCGCAG CCGCAGGCGC CGTCGGCCGT GCCCGCAGGC
TCCACGTTGC GGGACGCGAT CAGCTCGCGC CGCTTCGCCG GCCTCTATGC GGCGTGCCTG
ATCAGTTCGT TCGGGCTGTT CGTTCCCTTC GTCCACCTGG TGCCCTACGC GCTCGACCAC
GGCCTGCCGG CCGGCTCGGC CGTGCTGCTG CTCGGCGCCA TCGGCATCGG CAGCACCGCC
GGGCGGTTTT TTCTTGGCGG GCTGGCCGAC CGGCTCGGCC GGCAACTGGC GCTGCCGCTG
ATGTCGGCCG GCATGGCGCT TTCGCTGGTG GTGTGGGCGG TGTCCAGCGG GTTCTGGGGG
CTGGCCGCAT TCGCTTTTGC CTACGGCGTG TTCTATGGCG GCTTCGTCGC GCTGCTGCCC
GCGCTGGTCA TGGACTACTT CGGCGGCCGC AGCATCGGCG CGATCCTGGG CGTGCTGTAC
ACCAGCGTGG CTTTCGGCAC CCTGGTCGGC CCTAGCGCGG CGGGCTTTGC GTTCGACATC
AGCCGCAGCT ACCTGCTGCC GATCCTCGCC AGCATCGGCG CCAATCTGGT CGCGGCCGGG
GTGCTGCTGG CCATGTCAAA GGCGCGTGCG GCGTCCAAAC CGGGCGCGCG GGGTACAGTC
GGGAATGAAC CCACACACGC CCAGCGCTCC TAA
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| Protein sequence | MTSSSHPSPR TRLFRGWFVV AGAFAVTLVG FGSAYTFSAF LESLQRDFGA SRGSASLVFS
LAGFLYFGLG VVSGPLADRW GARRLSVAGM VLVGLGLAAA GQARSLAEAC LAYGLGVGLG
IGASYVPVLG AVQRWFVRRR GFASGLAVSG IGVGTLAMPP LASLLIEALG WRHAYLALGV
LAVVVGAGMA LLIEDDPRHR GLGPDGDPPQ PQAPSAVPAG STLRDAISSR RFAGLYAACL
ISSFGLFVPF VHLVPYALDH GLPAGSAVLL LGAIGIGSTA GRFFLGGLAD RLGRQLALPL
MSAGMALSLV VWAVSSGFWG LAAFAFAYGV FYGGFVALLP ALVMDYFGGR SIGAILGVLY
TSVAFGTLVG PSAAGFAFDI SRSYLLPILA SIGANLVAAG VLLAMSKARA ASKPGARGTV
GNEPTHAQRS
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