| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3210 |
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| Symbol | |
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| ID | 7973443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3387716 |
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| End bp | 3388843 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793795 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_002945094 |
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| Protein GI | 239816184 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.114966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAGAT TCTTGATGGG GTCGGCGCTG GCGCTGGCCT GCAGCGGCGC GGTGCATGCG
CAGTCCAGCG TCACCGTGTT CGGCGTGGTG GACCTTGGCG TGCAGTACAC GAAAGGCGAG
GGCGGCGGCT CGGTCAAGGC GCTGTCGAAC GGCGGCCTTT CGACCAGCCG GCTCGGATTC
CGCGGCACCG AAGACCTGGG CGGCGGCCTG CGCGCGGGCT TCTGGCTCGA AGGCAGCCTG
AACCCCGACA ACGGCACGGG CCGGCCGAGC AACAGCAACA ACCAGGCGAG CGGCGCGGGC
GCGGCGGGCC CGATCACCTT CGACCGCATG TCCTTCGTGA GCCTGTCGCA CCAGAAGTTC
GGCGAGCTGC GCCTGGGCCG CGACTTCATT CCCACGCACT ACAACAGCAT CTACTTCGAT
CCCTTCAACG CCAACGGCGT GGCGCGCGCG GGCAACCTCA CGTTCGCGGG CGCGGGCACC
GGGCCGCTGC CCACCGGCAT CACGGGCAGC AACACCGTGA GCTACTGGCT GCCGGCCGGG
CTCGGCGGCT TCTACGGCAT GGCGATGATC GGCACCGGCG AGAACGACTC CACCGCGCCC
AACCGCGACG ACGGCAACTT TGCCGGTGCG CGCTTCGGCT TTGCCGCGGG CGCGTTCGAC
ATTGCGGCGG CCGTCACGCG CACGCACTTC GACGCCACCG CCGCCATCGG CAACTACACG
CACGCCAACA TCGGCGGCAC CTGGGACGCG GGCTTTGCGA AGTTCTTCGC GCTCTACAAC
AAGGTGACGG TGAAGCTCGC CGCCGGCACG GTGCGCAAGA ACACGGCCGA GATCGGCGTG
CACATTCCGG CCTTCGAGGT CGGCCGCATC CGCCTGAGCT ACGCCTACCT GGACGACCGC
AGCGACGAGA GCCTGCGCAA TGCCAACGGC ATGCCGCGCA ACCGCGACGA TGCGCGCCAG
TTCGGCATCG GCTACGTGCA CAACCTCTCC AAGCGCACCG CGCTCTACGG CACCTACGCG
CGGCTCATGA ACAGCGGCCA GGCGCGCTAC GTGGTGAGCG GCGGCGTGGC GCCGGCGGGC
GGGCGGCGCT CGTCGGGCTG GGAGTTCGGT GTGCGGCATC TTTTTTGA
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| Protein sequence | MKRFLMGSAL ALACSGAVHA QSSVTVFGVV DLGVQYTKGE GGGSVKALSN GGLSTSRLGF
RGTEDLGGGL RAGFWLEGSL NPDNGTGRPS NSNNQASGAG AAGPITFDRM SFVSLSHQKF
GELRLGRDFI PTHYNSIYFD PFNANGVARA GNLTFAGAGT GPLPTGITGS NTVSYWLPAG
LGGFYGMAMI GTGENDSTAP NRDDGNFAGA RFGFAAGAFD IAAAVTRTHF DATAAIGNYT
HANIGGTWDA GFAKFFALYN KVTVKLAAGT VRKNTAEIGV HIPAFEVGRI RLSYAYLDDR
SDESLRNANG MPRNRDDARQ FGIGYVHNLS KRTALYGTYA RLMNSGQARY VVSGGVAPAG
GRRSSGWEFG VRHLF
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