Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3208 |
Symbol | |
ID | 7973441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3385753 |
End bp | 3386724 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793793 |
Product | aldo/keto reductase |
Protein accession | YP_002945092 |
Protein GI | 239816182 |
COG category | [R] General function prediction only |
COG ID | [COG0656] Aldo/keto reductases, related to diketogulonate reductase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00561471 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGAACT TCGGCCCGCC CGCTTTCTCG CCAGTTCCGT TTTTCGACGC GCGCTTGAAC CGCGCACGCT TCCTGCAGCT TGTTGCAGTG CTGCCGATGA CCTCCGCGAT GACCGCGGCG GCACAACACC TGCCAGCCAT CACGATGAAC ACCCGCCCCA TCCCCTCCAC GCAAGAAGCC CTGCCGGTGG TCGGCTGCGG CACCTGGATC GGCTTCGACC AGCGCCCCGG CAGCGACGAA TACCAGCGCC TGCCCGGCGT GCTGGACGCG CTGTTCGCGG CCGGCGGCAC GGTGATCGAC AGCTCGCCGA TGTACGGCCG CTCCGAGGAA ACCACCGGCG AGCTGCTGGC CGCCGCAGCG AAGCCGCGCG GGACCAAGGC CTTTCTCGCC ACCAAGGTCT GGACCTCGGG CCGCGAGGCC GGCATCGCGC AGATGGAGCA GTCGTTCGCG CGGCTGCGCA CCCAGCGCAT GGACCTGATG CAGGTGCACA ACCTGATGGA CTGGAAGACC CACTTGGCCA CGCTGCGCAA TTGGAAAGAA AAAGGCCGCG TGCGCTACCT CGGCATCACG CACTACACGG CCTCGGCCTA CCGCGAAGTC GAGGCCGTGC TGCGCGCCGA GAAGCTCGAC TTCCTGCAGA TCAACTATTC GCTCGACGCG CGCGAGGCCG AGGAGCGCCT GCTGCCGCTC GCGGCCGAGC GCGGCGTGGC GGTGATCGTC AACATGCCCT TCGGCGGCGG CGGGCTCTTG CGCCGGCTGC GCGACAAGCC GCTGCCCGCC TGGGCCGGCG AGATCGGCTG CGCGAGCTGG GCGCAGGTGC TGCTGAAGTT CGTGCTGAGC CACCCGGCCG TGACCTGCAC CATTCCCGGC ACCAGCCGCG CCGAGCACAT GGCCGACAAC GCCGCGGCCG GCGCCGGCGC GTTTCCGGAT GCGGCGTTCT GGCGCCGCAA TGCAGCTTCG GTCGAGCGCT GA
|
Protein sequence | MKNFGPPAFS PVPFFDARLN RARFLQLVAV LPMTSAMTAA AQHLPAITMN TRPIPSTQEA LPVVGCGTWI GFDQRPGSDE YQRLPGVLDA LFAAGGTVID SSPMYGRSEE TTGELLAAAA KPRGTKAFLA TKVWTSGREA GIAQMEQSFA RLRTQRMDLM QVHNLMDWKT HLATLRNWKE KGRVRYLGIT HYTASAYREV EAVLRAEKLD FLQINYSLDA REAEERLLPL AAERGVAVIV NMPFGGGGLL RRLRDKPLPA WAGEIGCASW AQVLLKFVLS HPAVTCTIPG TSRAEHMADN AAAGAGAFPD AAFWRRNAAS VER
|
| |