Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3158 |
Symbol | |
ID | 7973390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3321051 |
End bp | 3322157 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793742 |
Product | porin |
Protein accession | YP_002945042 |
Protein GI | 239816132 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.410423 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT ACTTGATCAC GCTGGCCGCG GCCAGCGCGG CTGGCGGAGC GCTGGCCCAA TCTTCCGTCA CGCTCTTCGG CGTGGTCGAC GCGGCCGTCA CCTACACGCG CGGCAGCGGC GATGGGTCGG CCCACAAGGC GCAGCTGACC AACAGCGGCA ACATGTTCAG CCGCCTCGGC TTTCGCGGCA CGGAAGACCT GGGCGGCGGG TACTCGGCCA ACTTCTGGAT GGAGATGGGC CTGCAGAACG ACAGCGGCAC GGGCTTTCCG TCGAACTCGA ACAACCAGGC CAGCGGCAAC GGCCCGGCGG GCGTGCTGAG CTTCAACCGC CGCTCGACGG TGAGCCTCGC GGGCCCGTTC GGCGAAGTGC GCCTGGGCCG CGACTACGTG CCGGCATTCT GGAACACGGC CATCTTCGAT CCCTTTGGCA CGGGCGGCGG CATCGGCGCC AACCAGATCT ATTTCTCGGG CCTGGGCGGC CTGGCCGCAC CGACAGGCAC GCGCGCCTCG AACAGCATCG GCTACTTCCT GCCCGCGAAC CTCGGCGGCT TTTACGGGCA GGTGATGTAT GCGATGGGCG AGAACGATTC GAACGCGCTG CTGCCGGGCA CCAGGGTGCC AAGCAAGCAT GACGGCGAAC ACACCGGCGC GCGCTTCGGC TACCAGAGCG GCGGCCTGCA CGTGGCCATT GCCACCGGCC GCACGCGCTA TGCGAGCGGC GACCTGCGCG TGACCAACCT GGGCGCGGCC TACAGCTTCG GCCCTTCGCT CATGAACCTC AAGCTCACGA GCGAGCTGTA CAAGGAATCG AAAGGCAGCA CCGACGCCAA GGGCGTGCTC GTCGGCTTCC AGCTGCCCAT CGGGCCGGGC GAGATCAAGG CCTCGTATGC ACGCTACAAG CTGGAACCCG CGAACGCGGT GCGCGAGCCC ACCTCGTCGA AACTGGCCAT CGGCTACGTG CACAACCTGT CCAGGCGCAG CGCGCTGTAC GGCACGCTCG CGCGCATCAG CAACAGGAAC GGCGCCGCGC AGGCGCTGGC GGGTGCCATC ACCATGCCGG GCCGCTCGTC CAGCGGCATC GAGCTGGGCA TGCGGCACAT GTTCTAG
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Protein sequence | MKKYLITLAA ASAAGGALAQ SSVTLFGVVD AAVTYTRGSG DGSAHKAQLT NSGNMFSRLG FRGTEDLGGG YSANFWMEMG LQNDSGTGFP SNSNNQASGN GPAGVLSFNR RSTVSLAGPF GEVRLGRDYV PAFWNTAIFD PFGTGGGIGA NQIYFSGLGG LAAPTGTRAS NSIGYFLPAN LGGFYGQVMY AMGENDSNAL LPGTRVPSKH DGEHTGARFG YQSGGLHVAI ATGRTRYASG DLRVTNLGAA YSFGPSLMNL KLTSELYKES KGSTDAKGVL VGFQLPIGPG EIKASYARYK LEPANAVREP TSSKLAIGYV HNLSRRSALY GTLARISNRN GAAQALAGAI TMPGRSSSGI ELGMRHMF
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