| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3136 |
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| Symbol | |
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| ID | 7974346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3295906 |
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| End bp | 3298185 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793721 |
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| Product | glycoside hydrolase family 3 domain protein |
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| Protein accession | YP_002945021 |
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| Protein GI | 239816111 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGTTC GAATCCCCGC CATGGCGGCG GCCCTGCTGG GCCTGGCCTC GGTTCTCTTC
TCCCCCGCGT CTCTCCCGGC CCCGGCCACC GCCGAGGGCG CCAAGGGCGC GGACGCCCGC
ATCGAATCGC TCATCGCCCG CATGACGGTC GAGGAGAAGG TCGGCCAGCT CAGCCTCTAC
GGCCCCGCCA ACACCAACAT TCCCGGCAAC CCGCAAGCCG GCCAGCGCAA TGCGCAGCAG
GAAATCGACG ACGTGCGCGC CGGCCGCGTC ACCGGCCTGT TCAACAACGA GGGGCTGGAG
CGCAAGCGGG TGCTGCAGGA GGTGGCCGTG CGCGAATCGC GCCTGGGCAT TCCGCTGCTC
TACGGCGCCG ACGTGATCCA CGGCTTTCGC ACCATCTTCC CCATGCCGCT GGCAGAAGCC
GCGAGTTGGG AGCCCGAACT GGCCGAGCGC ACCGCGCGCG CCGCCGCGGT GGAAGCGAGC
GCCGACGGCT TTCGCTGGAC CTTCGCGCCG ATGGTGGACA TTGCACGCGA TGCGCGATGG
GGCCGCGGCA TCGAGGGCGC GGGCGAAGAC GTGTACCTGG CCAACCAGTT CGCGGCCGCG
CGCGTGCGCG GCTTCCAGGG CGCCGACCTT TCGCGCGCCG ATTCGCTGCT GGCCACGCCC
AAGCACTTCG CGGCCTATGG CGCTGCCGAG GGCGGGCTCG ATTACGCCGC CACCGACATC
TCGGAGCGCA CGCTGCGCCA GGTCTACCTG CCGCCGTTCC GCGCCGCGCT GGACGCGGGC
GCGCTCTCGG TCATGAGCGC CTTCAACGAG ATCTCGGGCA TTCCGTCGAT TGCCAACCCG
GCGCTGCTCA CGGGCGTGCT GCGCGACGAA TGGAAGTTCA AGGGCTTCGT GGTGTCCGAC
TACACGGCCG ACGAGGAACT GATCGCGCAC GGCTACGCCG CCGACGGCCG CGAGGCGGCC
AAGCAGTCGT TCCTGGCCGG CACCGACGTC AGCATGCAGA GCGGCCTGTA CATGCGCCAC
CTGCCCGAAC TCGTGGCCTC GGGCGAAGTG CCGATGGCGC GCCTGGACGA CGCGGTGCGC
CGGGTGCTGT GGGTCAAGCA GAAGCTGGGC CTCTTCGACC AGCCGCTGCG CGGGCTCGAC
GCCGCACCAG CGCAGCCGCG GGCCGACAAC CCTGCCCACA TCGCGCTGGC ACGCGAGGAT
GCGCGCCGTT CCATCGTGCT GCTGAAGAAC GAGCGCGCAG TGCTGCCGCT GCCCAAGGCG
GGCCGCAAGA TCGCGCTGAT CGGGCCCTTC GCCTCGGGCA CGCAGGACCT GCTCGGCGCG
TGGAGCCTGT TTCCCGGCCA GGCGGCGCCC GTGGGCATCG ACGACGGCCT GCGCGCCGCG
CTGGCCGACC CGGGCGCGCT GGCGGTGGTG CGCGGCTCGG GCATCGATGC GCCGCTGGCC
GGCGGCATCG AGGCCGCCGT GGCCGCCGCG CGCGAGGCCG ACGTGGTGGT GCTCGCCATC
GGCGAGAGCG AGCGCATGTC GGGCGAGGCG CGCTCGCGCA CCGACATCGG CATTCCGCAG
GCCCAGCAGG ACCTGGCCGA GGCCGTGGCC GCCACCGGCA AGCCCGTGGT CGTGCTGCTG
AGCAACGGCC GCGCGATGGC ACTCAAGGGT GCGGTGCGCA ATGCCGACGC CATCCTCGTC
ACCTGGTTTC TCGGCGTGCA GACCGGCAAC GCCATTGCCG ACGTGGTGTT CGGCGACTTC
AATCCCTCGG GCCGCCTGCC GGTGAGCTTT CCGCAGGCGT CCGGCCAGGT GCCCTTCTAC
TACGGCCAGA AGCGCACCGG CCGGCCGCTG CCCGACTACG ACCAGGCCAT GGCCTTCAAG
ACCCGCTACG TGGACACCAC GAACCGGGCG CTCTACCCCT TCGGCCATGG CATCGGCTAT
GCGCCGGTGC GCTACGACGG CATGGAGCTG AGCCAGGACC GGCTGCCGAT CGGCGGCACG
CTGCGCGTGC GCGCCACCGT CACCAACACC GGCCAGCGCG AGGCCGAGGA AGTGGTGCAG
CTGTATGCCG CCGAACGCGC CGCGAGCGTG ACGCGGCCGG TGCGCGAGCT CAAGAACTTC
CGCAAGGTGC GCATCGGGCC CGGTGCGTCG AAGGTGGTCG AGTTCACGCT GCGCCCGGAC
GACCTGCAGT TCATCGGCCG CGACATGAAG CCGACGGTGG AGCCGGGAGA GTTCGACCTG
TGGGTGGCAC CTTCGGCCGC AGACGGCATC AAGAAGAGCT TCGCGCTCAC GCGGGAGTGA
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| Protein sequence | MHVRIPAMAA ALLGLASVLF SPASLPAPAT AEGAKGADAR IESLIARMTV EEKVGQLSLY
GPANTNIPGN PQAGQRNAQQ EIDDVRAGRV TGLFNNEGLE RKRVLQEVAV RESRLGIPLL
YGADVIHGFR TIFPMPLAEA ASWEPELAER TARAAAVEAS ADGFRWTFAP MVDIARDARW
GRGIEGAGED VYLANQFAAA RVRGFQGADL SRADSLLATP KHFAAYGAAE GGLDYAATDI
SERTLRQVYL PPFRAALDAG ALSVMSAFNE ISGIPSIANP ALLTGVLRDE WKFKGFVVSD
YTADEELIAH GYAADGREAA KQSFLAGTDV SMQSGLYMRH LPELVASGEV PMARLDDAVR
RVLWVKQKLG LFDQPLRGLD AAPAQPRADN PAHIALARED ARRSIVLLKN ERAVLPLPKA
GRKIALIGPF ASGTQDLLGA WSLFPGQAAP VGIDDGLRAA LADPGALAVV RGSGIDAPLA
GGIEAAVAAA READVVVLAI GESERMSGEA RSRTDIGIPQ AQQDLAEAVA ATGKPVVVLL
SNGRAMALKG AVRNADAILV TWFLGVQTGN AIADVVFGDF NPSGRLPVSF PQASGQVPFY
YGQKRTGRPL PDYDQAMAFK TRYVDTTNRA LYPFGHGIGY APVRYDGMEL SQDRLPIGGT
LRVRATVTNT GQREAEEVVQ LYAAERAASV TRPVRELKNF RKVRIGPGAS KVVEFTLRPD
DLQFIGRDMK PTVEPGEFDL WVAPSAADGI KKSFALTRE
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