Gene Vapar_3045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3045 
Symbol 
ID7973765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3204336 
End bp3205277 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content72% 
IMG OID644793629 
Product40-residue YVTN family beta-propeller repeat protein 
Protein accessionYP_002944930 
Protein GI239816020 
COG category[S] Function unknown 
COG ID[COG3391] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02276] 40-residue YVTN family beta-propeller repeat 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.425912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCTGC TGTGCAGCCC GGCCTGGGCC TCGCCGTTCG CCTACATCAC CAACCAGGGC 
AGCCACGACG TGTCGGTGAT CGACCTCGCC TCGCAGCAGG TGGTGGCCAC GGTGCCCGTG
GGCCGCTCGC CGGCCGGCGT GGTGGCGTCC AGCCGCGCGG GCCGGGCCTT CGTCTCCAAC
CCCGACAGCA AGACCATCTC GGTCATCGAC ATGCGCCAGC AGAAGGTCGT GAACACGCTG
CCGGCCGGCG ACGGGCCGGT GGGCATCGAC ATCTCGGCCG ACGGCCGGCG CCTCTACGTG
GCCGACTGGT ACAGCGGCCG GCTGCTGGTG CTCGACGCGC AGGCCGCCGG TGCCGCCAAG
CCCCTGGCTT CGATCGCGGT CGGCCGCGCG CCTGCCGGCG TGGCCGCGCA TCCCGGCGGC
GCCGCCGTTT TCGTGGCCGA GCGCGACGAC GACAGCGTGG CCGTGGTCGA CACCGCCGCG
CAGCGCGTGC TGGCGCGCGT GCGCGTCGGC AGCCATCCCT TCGCGCTGTT CTACGACGCG
CCGCGCTCGC GCCTCTACGC GCTCAACGTG CAGAGCAACG ACGTCTCGGT GGTCGACATG
CGCGACATCC GCCGCCCGGC CGTGATTGCC ACCGTGAAGG TCGGCAAGGC GCCCTACGGC
GCGGCGCTGG CCGAGGGCGG CGCGCTGCTC TACGTGACCA ACCAGCACGA AGACTCGGTC
AGCGTGATCG ATGCCGCCTC GCTGAAGCTG CTGCGCACCC TCCCCGGCTT TGCCTACCCC
GAAGGCATTG CCGCGCACGG CGACCGGGTC TACGTCGTCA ACTGGATGGA CGACAACGTG
CAGGTGCTGG ACGCCGCGAG CGGGCAGAAG CTCAAGACCA TTGCCACGGG ACAGAACAGC
CGCGGCTTCG GTGCCTTCAT CGGTGCGCCG ATGGAGCCCT GA
 
Protein sequence
MLLLCSPAWA SPFAYITNQG SHDVSVIDLA SQQVVATVPV GRSPAGVVAS SRAGRAFVSN 
PDSKTISVID MRQQKVVNTL PAGDGPVGID ISADGRRLYV ADWYSGRLLV LDAQAAGAAK
PLASIAVGRA PAGVAAHPGG AAVFVAERDD DSVAVVDTAA QRVLARVRVG SHPFALFYDA
PRSRLYALNV QSNDVSVVDM RDIRRPAVIA TVKVGKAPYG AALAEGGALL YVTNQHEDSV
SVIDAASLKL LRTLPGFAYP EGIAAHGDRV YVVNWMDDNV QVLDAASGQK LKTIATGQNS
RGFGAFIGAP MEP