| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3038 |
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| Symbol | |
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| ID | 7973758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3197643 |
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| End bp | 3198641 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793622 |
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| Product | 40-residue YVTN family beta-propeller repeat protein |
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| Protein accession | YP_002944923 |
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| Protein GI | 239816013 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.355652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCAAC CCTTCCTGCC CCCGCCTGCG CGCACCCTGG TCCGCGCGGC CGCTAGCGCG
CTCGCGCTGG CCGCCGCGAG CGCCGCCGCG CTGGCGCAGG GCACCGCCTA TGTGTCGAGC
GAAAAGGACA GCGCGCTGAC GATGATCGAC CTGGCGACCC TGGCCGTGAA GGGCACGATC
CCGACCTGCA AGCGCGCGCG CCACATCCAG CTCACGCCCG AGCGCCAGAT CATGGTGGCC
TGCACCGATT CCAACCAGGC GGACCTGATC GACCCCGCGA GCGGCAAGTC GGTGCGGCGC
ATTCCGCTGG GCGACGAGCC CGAGGCCTTC GACCTGTCGC CGGACGGCAA GGTCATCTAC
GTTTCCAACG AGGACGCGGG CGAGGCCAGC TTCATCGACG CGGCCAGCGG CAAGAAGCTG
CGCTCGGTCA AGGTGGGCGC GGAGCCCGAA GGCGTCAAGG TCAGCGCCGA CGGCAAGACG
CTGTACATCA CGTCCGAGGT GGCGAGCCTG GTGCACGTGA TCGACACGGC CAGCGGCAAG
GTCGTGAAGA ACATCAAGGT CGGCAAGCGC CCGCGGCGCA TGGCCATCAC GCCGGACGGC
AAGGAGCTCT GGGTCACCAA CGAACTGGGC GCGAGCGTCA GCATCGTCTC GACTGCGACG
AACGAGGTGA TCGACACGCT CAAGTTCGAG GTGAAGGGCG CGCGCGCCGA GGACATCACG
CCCGTGGGCA TCCAGATGAC AAGCGACGGC AAGCGGGCCT TCGTGGGCCT GGGCCGCGCC
AACCACGTGG CCTTCGTCGA CGTGGCCGGC CGCAAGGTCG GCTCGCTGGT GCTGGTCGGC
AAGCGGGCCT GGAACGTCAC GCTCGACAAG GCGCAGGCGC GGCTCTACGT GGTCAACGGC
TTGAGCGACG ACGTGACGGT GGTCGACGTG GCCGGCGCCA AAGCCATCAA GAGCGTTCCG
GTAGGGCGCG TGCCCTATGG GCTCGTGATC GTCGAATGA
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| Protein sequence | MPQPFLPPPA RTLVRAAASA LALAAASAAA LAQGTAYVSS EKDSALTMID LATLAVKGTI
PTCKRARHIQ LTPERQIMVA CTDSNQADLI DPASGKSVRR IPLGDEPEAF DLSPDGKVIY
VSNEDAGEAS FIDAASGKKL RSVKVGAEPE GVKVSADGKT LYITSEVASL VHVIDTASGK
VVKNIKVGKR PRRMAITPDG KELWVTNELG ASVSIVSTAT NEVIDTLKFE VKGARAEDIT
PVGIQMTSDG KRAFVGLGRA NHVAFVDVAG RKVGSLVLVG KRAWNVTLDK AQARLYVVNG
LSDDVTVVDV AGAKAIKSVP VGRVPYGLVI VE
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