Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3036 |
Symbol | |
ID | 7973756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3195596 |
End bp | 3196483 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793620 |
Product | ABC-2 type transporter |
Protein accession | YP_002944921 |
Protein GI | 239816011 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.309565 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGATC GCGCGCTAGA AACCCCCAAG CCCGCGGGCG AACAGGCCGA GCCGCTGGCG CGTCGCGGGC TGGGCCATGC GCTGCAGGCG ATGCGCGCGA TCATGCTGCG CGAGATCTAC AAGTTCTCGC AGCAGACCGG GCGGCTGGTG TCGGCGCTGG TGCGGCCGCT GCTGTGGCTG GCGGTGTTCG CGGCCGGTTT CCGCAACGTC TTCGGCGTGG CGATCGTCGA GCCCTATGAC ACCTACATTC CCTACGACGT CTACATCGTG CCGGGGCTGG TCGGCATGGT GCTGCTGTTC AACGGCATGC AGTCGTCGCT GGCCATGGTC TACGACCGCG AGATGGGCCT GATGCGCCTG CTGCTTACCG CGCCGCTGCC GCGGCCCTGG CTCTTGTTCT CCAAGCTCTG CGCCACCGCG CTGCTGTCGG TGCTGCAGGC GCTGGTGTTC GTGGTGGTGG CGGCGCTGAT CGGCACCGAG CTGCCGCTGC TGTCGCTCTC GGCCCTGCAT GCGCTGGTGG CGCTGGCGGC CGGCGCGCTC ATGCTGGGTG CGCTCGGGCT GCTGCTGTCG GTGCACATCA AGCAGCTGGA GAACTTCGCG GGCACGATGA ACTTCGTCAT CTTCCCGATG TACTTCCTGT CGACCGCGCT CTATCCGCTG TGGAAGCTGC AGGAATCGGG CGCCGAATGG GTGTACCAGC TCGCGCGTTT CAATCCCTTC ACCTACGCGG TGGAGTGGAT CCGCTTTGCG CTCTACGGCA AGGACCCGGG CCTGGCACCT TACGTGGTGC TGGGCTGCCT GGTGGTTTTC TTCGGGCTCG CCTGCTGGGG CTACGACCCG CAGCGCGGCT TCGGCGGCCT CACCAAGCGC GGCGGAGGCG GGCCATGA
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Protein sequence | MSDRALETPK PAGEQAEPLA RRGLGHALQA MRAIMLREIY KFSQQTGRLV SALVRPLLWL AVFAAGFRNV FGVAIVEPYD TYIPYDVYIV PGLVGMVLLF NGMQSSLAMV YDREMGLMRL LLTAPLPRPW LLFSKLCATA LLSVLQALVF VVVAALIGTE LPLLSLSALH ALVALAAGAL MLGALGLLLS VHIKQLENFA GTMNFVIFPM YFLSTALYPL WKLQESGAEW VYQLARFNPF TYAVEWIRFA LYGKDPGLAP YVVLGCLVVF FGLACWGYDP QRGFGGLTKR GGGGP
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