Gene Vapar_3036 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3036 
Symbol 
ID7973756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3195596 
End bp3196483 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content68% 
IMG OID644793620 
ProductABC-2 type transporter 
Protein accessionYP_002944921 
Protein GI239816011 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.309565 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGATC GCGCGCTAGA AACCCCCAAG CCCGCGGGCG AACAGGCCGA GCCGCTGGCG 
CGTCGCGGGC TGGGCCATGC GCTGCAGGCG ATGCGCGCGA TCATGCTGCG CGAGATCTAC
AAGTTCTCGC AGCAGACCGG GCGGCTGGTG TCGGCGCTGG TGCGGCCGCT GCTGTGGCTG
GCGGTGTTCG CGGCCGGTTT CCGCAACGTC TTCGGCGTGG CGATCGTCGA GCCCTATGAC
ACCTACATTC CCTACGACGT CTACATCGTG CCGGGGCTGG TCGGCATGGT GCTGCTGTTC
AACGGCATGC AGTCGTCGCT GGCCATGGTC TACGACCGCG AGATGGGCCT GATGCGCCTG
CTGCTTACCG CGCCGCTGCC GCGGCCCTGG CTCTTGTTCT CCAAGCTCTG CGCCACCGCG
CTGCTGTCGG TGCTGCAGGC GCTGGTGTTC GTGGTGGTGG CGGCGCTGAT CGGCACCGAG
CTGCCGCTGC TGTCGCTCTC GGCCCTGCAT GCGCTGGTGG CGCTGGCGGC CGGCGCGCTC
ATGCTGGGTG CGCTCGGGCT GCTGCTGTCG GTGCACATCA AGCAGCTGGA GAACTTCGCG
GGCACGATGA ACTTCGTCAT CTTCCCGATG TACTTCCTGT CGACCGCGCT CTATCCGCTG
TGGAAGCTGC AGGAATCGGG CGCCGAATGG GTGTACCAGC TCGCGCGTTT CAATCCCTTC
ACCTACGCGG TGGAGTGGAT CCGCTTTGCG CTCTACGGCA AGGACCCGGG CCTGGCACCT
TACGTGGTGC TGGGCTGCCT GGTGGTTTTC TTCGGGCTCG CCTGCTGGGG CTACGACCCG
CAGCGCGGCT TCGGCGGCCT CACCAAGCGC GGCGGAGGCG GGCCATGA
 
Protein sequence
MSDRALETPK PAGEQAEPLA RRGLGHALQA MRAIMLREIY KFSQQTGRLV SALVRPLLWL 
AVFAAGFRNV FGVAIVEPYD TYIPYDVYIV PGLVGMVLLF NGMQSSLAMV YDREMGLMRL
LLTAPLPRPW LLFSKLCATA LLSVLQALVF VVVAALIGTE LPLLSLSALH ALVALAAGAL
MLGALGLLLS VHIKQLENFA GTMNFVIFPM YFLSTALYPL WKLQESGAEW VYQLARFNPF
TYAVEWIRFA LYGKDPGLAP YVVLGCLVVF FGLACWGYDP QRGFGGLTKR GGGGP