| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3019 |
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| Symbol | |
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| ID | 7973739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3175725 |
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| End bp | 3178598 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793603 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_002944904 |
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| Protein GI | 239815994 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAACC CATCGCAAGA CATCGACCAC GGCACGCCGC GCCGTGAGTC CACCGAGGAA
GTCACGCTCG AGATCGACGG CATGCCGGTG ACGGTGGCCA AGGGCACCTC GCTGATGCGC
GCCGCGGTCG ATGCGGGCGT GCAGGTGCCC AAGCTGTGCG CGACCGACAG CCTGGAGCCC
TTCGGCTCGT GCCGGCTCTG CCTGGTGGAG ATCGACGGGC GCAAGGGCTA TCCGGCGTCG
TGCACCACGC CGGCCGAGGC CGGCATGAAG GTGCGCACGC AAAGCCCGAG GCTGCAGGAG
CTGCGCAAGG GCGTGATGGA GCTCTACATC TCCGACCATC CGCTCGACTG CCTCACCTGC
GCCGCCAACG GCGACTGCGA ACTGCAGGAC ATGGCCGGCG TCACGGGCCT GCGCAACGTG
CGCTATGGCT ACGACGGCGC CAACCACCTG AAGAGCGCCA AGGACGAGTC CAATCCCTAC
TTCACCTACG ACCCGTCCAA GTGCATCGTC TGCAACCGCT GCGTGCGCGC GTGCGAAGAA
ACGCAGGGCA CCTTCGCGCT CACCATCAGC GGCCGCGGCT TCGAGTCGCG CGTGTCGCCA
GGCCAGGACC AGCCCTTCAT GGAATCCGAA TGCGTGAGCT GCGGCGCCTG CGTGCAGGCC
TGCCCCACCG CCACGCTGCA GGAAAAATCG GTGATCTGGC TGGGCCAGGC CGAGCACAGC
GCCATCACCA CCTGCGCCTA TTGCGGTGTG GGCTGCGGCT TCAAGGCCGA AATGAAGGGC
AACGAAGTGG TCCGCATGGT GCCCTGGAAG GACGGCAAGG CCAACGAAGG CCACTCGTGC
GTCAAGGGCC GCTTCGCCTG GGGCTACGCC ACCCACAAGG ACCGCGTTCT CAAGCCCATG
ATCCGCAGCA AGATCACCGA CCCGTGGCGC GAGGTGAGCT GGAACGAAGC CGTCAACTAC
GCCGCCAGCG AGTTCCGCCG CATCCAGGCC AAGTACGGCA CCGATTCCAT CGGCGGCCTC
GTGTCCTCGC GCTGCACCAA CGAAGAGGGC TACCTGGTGC AGAAGCTGGT GCGCGCGGCC
TTCGGCAACA ACAACGTCGA CACCTGCGCG CGCGTGTGCC ATTCGCCCAC CGGCTACGGA
CTGAAGCAGA CCATGGGCGA ATCGGCCGGC ACGCAGACCT TCAAGTCGGT CGAGAAGTCG
GACGTGATCA TGGTGATCGG CGCCAATCCG TCCGACGGCC ACCCGGTGTT CGCATCGCGC
ATGAAAAGGC GCCTGCGCGC CGGCGCCCGG CTGATCGTGA TCGACCCCCG CACCATCGAC
CTGGTGAAGT CGCCGCACGT CAAGGCCGAC CACCACCTCA AGCTCAGGCC CGGCACCAAC
GTGGCGGTGA TCAGCGCCAT GGCGCATGTG ATCGTGATCG AAGGCCTGGT CGACGAGGCC
TTCGTGGCCG AGCGCTGCGA GCCCAAGTCG TTCAACGAGT GGCGCGAATT CGTCGCGCGA
CCGGCCAACT CGCCCGAGGC CATGGAAGCC GTGACCGGCG TGCCGGCCGC CGAGCTGCGC
GCCGCCGCCC GGCTCTTCGC CAAGGGCCAC GACGGCAAGC GCAATGCCGC CATCTACTAC
GGCCTGGGCG TGACCGAGCA CAGCCAGGGC TCGACCATGG TGATGGGCAT CGCCAACCTG
GCCATGGCCA CCGGCAACGT GGGCCGCGAA GGCGTGGGCG TGAATCCGCT GCGCGGCCAG
AACAACGTGC AGGGTTCCTG CGACATGGGC TCGTTCCCGC ACGAGCTGCC GGGCTACCGC
CATGTGTCTG ACAGCACCGC ACGCGGCAGC TTCGAAGACG CCTGGGGCGT GGCGCTGCGG
GCCGAGCCGG GCCTGCGCAT TCCCAACATG TTCGATGCCG CCATCACCGG CAGCTTCAAG
GGCCTGTACT GCGAAGGCGA GGACGTGGTC CAGTCGGACC CCAACACCCA GCACGTGGCC
GAGGCGATGA TGGCCATGGA ATGCATCGTG GTGCAGGACC TGTTCCTCAA CGAGACCGCC
AAATACGCGC ACGTGTTCCT GCCGGGCGCG TCGTTCCTGG AAAAGGACGG CACCTTCACC
AACGCCGAGC GCCGCATCTC GCGCGTCACC AAGGTCATGC CGCCCAAGGC CGGCTATGCC
GACTGGGAGG TGACGCAGCT GCTCTCCAAC GCGCTGGGCT ACCCCATGAA CTACGCGAGC
GCCGAGGAAA TCATGGACGA GATCGCCGCG CTCACGCCCA CCTTCACGGG CGTGAGCTAC
GCCAAGCTCG CGAAGCTGGG CAGCGTGCAG TGGCCCTGCA ACGAGGCCGC GCCGGAAGGC
ACGCCGACCA TGCACATCGG CGAGTTCGTG CGCGGCAAGG GCAAGTTCAT CATCACGCAG
TACGTGCCGA CCGACGAGAA GGTCACGCGC ATGTACCCGC TGATCCTGAC TACTGGGCGC
ATCCTCTCGC AGTACAACGT GGGCGCGCAG ACCCGCCGCA CCGAGAACAA CCAGTGGCAC
AGCGAGGACC GGCTCGAAAT CCATCCGGCC GACGCCGAGG ACCGCGGCAT TGCCGAGGGC
GACTGGGTCG GCATCCGGAG CCGCGCCGGC GAAACCGTGC TGCGCGCCAC CATCACCGAG
CGCGTGCAGC CGGGCGTGGT CTACACCACC TTCCACTTCC CCGAATCGGG CGCCAACGTG
ATCACCACCG ACAACTCCGA CTGGGCCACC AACTGCCCCG AGTTCAAGGT GACCGCGGTG
CAGGTGATGC CGGTGATGCA GCCTTCCGAA TGGCAGCAGG AATACAGCCG GTTCAACGCG
CTGCAGGAAG AACTGCTGAG CAAGCGCATC GAAGAAACGG CGGCCGCCAA GTGA
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| Protein sequence | MLNPSQDIDH GTPRRESTEE VTLEIDGMPV TVAKGTSLMR AAVDAGVQVP KLCATDSLEP
FGSCRLCLVE IDGRKGYPAS CTTPAEAGMK VRTQSPRLQE LRKGVMELYI SDHPLDCLTC
AANGDCELQD MAGVTGLRNV RYGYDGANHL KSAKDESNPY FTYDPSKCIV CNRCVRACEE
TQGTFALTIS GRGFESRVSP GQDQPFMESE CVSCGACVQA CPTATLQEKS VIWLGQAEHS
AITTCAYCGV GCGFKAEMKG NEVVRMVPWK DGKANEGHSC VKGRFAWGYA THKDRVLKPM
IRSKITDPWR EVSWNEAVNY AASEFRRIQA KYGTDSIGGL VSSRCTNEEG YLVQKLVRAA
FGNNNVDTCA RVCHSPTGYG LKQTMGESAG TQTFKSVEKS DVIMVIGANP SDGHPVFASR
MKRRLRAGAR LIVIDPRTID LVKSPHVKAD HHLKLRPGTN VAVISAMAHV IVIEGLVDEA
FVAERCEPKS FNEWREFVAR PANSPEAMEA VTGVPAAELR AAARLFAKGH DGKRNAAIYY
GLGVTEHSQG STMVMGIANL AMATGNVGRE GVGVNPLRGQ NNVQGSCDMG SFPHELPGYR
HVSDSTARGS FEDAWGVALR AEPGLRIPNM FDAAITGSFK GLYCEGEDVV QSDPNTQHVA
EAMMAMECIV VQDLFLNETA KYAHVFLPGA SFLEKDGTFT NAERRISRVT KVMPPKAGYA
DWEVTQLLSN ALGYPMNYAS AEEIMDEIAA LTPTFTGVSY AKLAKLGSVQ WPCNEAAPEG
TPTMHIGEFV RGKGKFIITQ YVPTDEKVTR MYPLILTTGR ILSQYNVGAQ TRRTENNQWH
SEDRLEIHPA DAEDRGIAEG DWVGIRSRAG ETVLRATITE RVQPGVVYTT FHFPESGANV
ITTDNSDWAT NCPEFKVTAV QVMPVMQPSE WQQEYSRFNA LQEELLSKRI EETAAAK
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