Gene Vapar_3004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3004 
Symbol 
ID7973724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3160539 
End bp3161459 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content64% 
IMG OID644793589 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002944890 
Protein GI239815980 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGAATT ACTTCCTCAA ACGACTGTTG GGCCTGATCC CCACGCTGCT CATCGTGGCC 
GTGCTGGTGT TCCTGTTCGT CCACATGCTG CCCGGCGATC CGGCGCGACT TGCCGCTGGC
CAGGAGGCCG ACGAGCAGAC CGTGGCCATG GTCCGCGCGG AACTCGGGCT CGACAAGCCG
CTGCCCCAGC AGTTCGTGAG CTTCTTCTCC CACATGCTGC AGGGCGACTT CGGCACTTCG
ATCCGCACGC GACGGCCGGT GTCGATGGAG ATCGGCGAGC GCTTCTTCCC CACGGTGATG
CTGACCATCA CCAGCATGGT GTGGGCCGTG ATCTTCGGCA TGGGCATCGG CATTGTTTCT
GCCGTGTTCC GCAACCAATG GCCCGACCGG CTCGGCATGA CGCTGGCCGT GTCGGGCATC
TCCTTTCCGG CATTTGCCCT CGGCATGCTG CTGATGCAGA TCTTCTCGGT CCAGCTCGGC
TGGCTGCCCA CGGTGGGCGC GAGCAGCTGG AAGCACTACA TCCTGCCCTC GATCACGCTG
GGCGCCGCGG TGGCCGCGGT GATGGCGCGC TTCACGCGCG CTTCGTTCGT CGAAGTGATC
CAGGAAGATT TCGTTCGCAC CGCGCGTGCC AAGGGCGTGC GCGAGCGCAC CGTCATCATC
AAGCACTGCC TGCGCAATGC GCTGATCCCG GTGGTCACGA TGATGGGGCT GCAGTTCGGC
TTTCTGCTGG GCGGCTCGAT CCTGGTCGAG GCGGTCTTCA ACTGGCCGGG CCTCGGGCGC
CTGCTGGTCG ACGCCGTGCA GATGCGCGAC TACCCCGTGA TCCAGACGCT GGTGCTGCTG
TTCTCGCTCG AATTCATCCT GATCAACCTC GTGGTGGACG TGCTGTACGG CTACATCAAC
CCGACCATCC GCTACAAGTG A
 
Protein sequence
MLNYFLKRLL GLIPTLLIVA VLVFLFVHML PGDPARLAAG QEADEQTVAM VRAELGLDKP 
LPQQFVSFFS HMLQGDFGTS IRTRRPVSME IGERFFPTVM LTITSMVWAV IFGMGIGIVS
AVFRNQWPDR LGMTLAVSGI SFPAFALGML LMQIFSVQLG WLPTVGASSW KHYILPSITL
GAAVAAVMAR FTRASFVEVI QEDFVRTARA KGVRERTVII KHCLRNALIP VVTMMGLQFG
FLLGGSILVE AVFNWPGLGR LLVDAVQMRD YPVIQTLVLL FSLEFILINL VVDVLYGYIN
PTIRYK