Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3004 |
Symbol | |
ID | 7973724 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3160539 |
End bp | 3161459 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644793589 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002944890 |
Protein GI | 239815980 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAATT ACTTCCTCAA ACGACTGTTG GGCCTGATCC CCACGCTGCT CATCGTGGCC GTGCTGGTGT TCCTGTTCGT CCACATGCTG CCCGGCGATC CGGCGCGACT TGCCGCTGGC CAGGAGGCCG ACGAGCAGAC CGTGGCCATG GTCCGCGCGG AACTCGGGCT CGACAAGCCG CTGCCCCAGC AGTTCGTGAG CTTCTTCTCC CACATGCTGC AGGGCGACTT CGGCACTTCG ATCCGCACGC GACGGCCGGT GTCGATGGAG ATCGGCGAGC GCTTCTTCCC CACGGTGATG CTGACCATCA CCAGCATGGT GTGGGCCGTG ATCTTCGGCA TGGGCATCGG CATTGTTTCT GCCGTGTTCC GCAACCAATG GCCCGACCGG CTCGGCATGA CGCTGGCCGT GTCGGGCATC TCCTTTCCGG CATTTGCCCT CGGCATGCTG CTGATGCAGA TCTTCTCGGT CCAGCTCGGC TGGCTGCCCA CGGTGGGCGC GAGCAGCTGG AAGCACTACA TCCTGCCCTC GATCACGCTG GGCGCCGCGG TGGCCGCGGT GATGGCGCGC TTCACGCGCG CTTCGTTCGT CGAAGTGATC CAGGAAGATT TCGTTCGCAC CGCGCGTGCC AAGGGCGTGC GCGAGCGCAC CGTCATCATC AAGCACTGCC TGCGCAATGC GCTGATCCCG GTGGTCACGA TGATGGGGCT GCAGTTCGGC TTTCTGCTGG GCGGCTCGAT CCTGGTCGAG GCGGTCTTCA ACTGGCCGGG CCTCGGGCGC CTGCTGGTCG ACGCCGTGCA GATGCGCGAC TACCCCGTGA TCCAGACGCT GGTGCTGCTG TTCTCGCTCG AATTCATCCT GATCAACCTC GTGGTGGACG TGCTGTACGG CTACATCAAC CCGACCATCC GCTACAAGTG A
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Protein sequence | MLNYFLKRLL GLIPTLLIVA VLVFLFVHML PGDPARLAAG QEADEQTVAM VRAELGLDKP LPQQFVSFFS HMLQGDFGTS IRTRRPVSME IGERFFPTVM LTITSMVWAV IFGMGIGIVS AVFRNQWPDR LGMTLAVSGI SFPAFALGML LMQIFSVQLG WLPTVGASSW KHYILPSITL GAAVAAVMAR FTRASFVEVI QEDFVRTARA KGVRERTVII KHCLRNALIP VVTMMGLQFG FLLGGSILVE AVFNWPGLGR LLVDAVQMRD YPVIQTLVLL FSLEFILINL VVDVLYGYIN PTIRYK
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