| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2959 |
|---|
| Symbol | |
|---|
| ID | 7972235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3119249 |
|---|
| End bp | 3120142 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644793544 |
|---|
| Product | sulfate ABC transporter, inner membrane subunit CysW |
|---|
| Protein accession | YP_002944845 |
|---|
| Protein GI | 239815935 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4208] ABC-type sulfate transport system, permease component |
|---|
| TIGRFAM ID | [TIGR00969] sulfate ABC transporter, permease protein
[TIGR02140] sulfate ABC transporter, permease protein CysW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCGC CTTCCAAGAT CATTCGCCGC GCGCAGGCCG GCACCACCGA ATCGGCCTGG
GTGCGCTGGC TGCTCATCGG CGTTGCGCTC GCGTTCATGT TCCTGTTCCT CGTGCTGCCG
CTGGCCGCCG TGGCGACGGA AGCCCTGCGC AAGGGCCTCG ATGCCTATCT CGAAGCGCTG
AAGGAACCCG ACGCCTGGAG CGCGATCCGC CTCACGCTGA TCACGGCCGC CATCGCGGTG
CCGCTGAACC TGGTGTTCGG CGTGGCGGCG GCCTGGGCCA TTGCCAAGTT CGAGTTCCGC
GGCAAGGCCT TCCTGACCAC GCTGGTGGAC CTGCCGTTCG CGGTGTCGCC GGTGGTGGCG
GGCCTGATCT ACGTGCTGGT GTTCGGCGCG CAGGGCTGGC TCGGCCCGTG GCTGGCCGAA
CACGACATCA AGATCATCTT CGCGGTGCCG GGCATCGTGC TGGCGACCGT GTTCGTGACC
TTTCCGTTCA TTGCGCGCGA GCTCGTGCCG CTGATGCAGG CGCAGGGCAC CGACGAGGAG
CAGGCCGCGA TCGTGCTCGG CGCGACCGGC TGGCAGACCT TCTGGCGCGT GACCCTGCCC
AACATCAAGT GGGGCCTGCT GTACGGCGTG ATCCTCTGCA ACGCGCGCGC CATGGGCGAG
TTCGGCGCGG TGTCGGTGGT GTCGGGCCAC ATCCGCGGCC AGACCAACAC CATGCCGCTG
CATGTGGAAG TGCTCTACAA CGAATACCAG TCGGTCGCGG CCTTTGCCGT GGCCTCGCTG
CTTGCCATCC TGGCGCTGGT CACGCTGGTG ATCAAGTCGG TCATCGAGTG GCGCCACGAA
CGCGAAATGA AAGCCATTGC GGAGCTGCCG CCAGAGCGGC CCACGGCGGC TTGA
|
|---|
| Protein sequence | MSAPSKIIRR AQAGTTESAW VRWLLIGVAL AFMFLFLVLP LAAVATEALR KGLDAYLEAL
KEPDAWSAIR LTLITAAIAV PLNLVFGVAA AWAIAKFEFR GKAFLTTLVD LPFAVSPVVA
GLIYVLVFGA QGWLGPWLAE HDIKIIFAVP GIVLATVFVT FPFIARELVP LMQAQGTDEE
QAAIVLGATG WQTFWRVTLP NIKWGLLYGV ILCNARAMGE FGAVSVVSGH IRGQTNTMPL
HVEVLYNEYQ SVAAFAVASL LAILALVTLV IKSVIEWRHE REMKAIAELP PERPTAA
|
|---|
| |