Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2935 |
Symbol | |
ID | 7972211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3089505 |
End bp | 3090989 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793520 |
Product | protein of unknown function UPF0061 |
Protein accession | YP_002944821 |
Protein GI | 239815911 |
COG category | [S] Function unknown |
COG ID | [COG0397] Uncharacterized conserved protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.185797 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCTTGC TTGCTGAAGA CACGGCCGCC GCGGACCTGG GATTGCGCTG GAAACCCGGA TTCCGGGCGC TGGGCCCCGC CTTTCTCACC GAACTGCGGC CGACGCCGCT GCCCGATCCC CCCTACTGGG TGGGCCACAG CGAGGCAGCG GCCCGCCTGC TCGGCCTGCC GGCCGATTGG CGGCAATCGG AGGGCACGCT GGCGGCATTG ACCGGCAACC TGCCCGTCGC CGGAACGCTG CCCTTCGCCA CCGTGTACAG CGGCCACCAG TTCGGCGTCT GGGCCGGCCA GCTCGGCGAC GGCCGCGCCA TCATGCTTGG CGAAACCGAG GGCGGCCTCG AGGTGCAGCT CAAGGGCGCG GGCCGCACGC CCTACTCGCG CGGCGCCGAC GGCCGCGCCG TGCTGCGCTC CAGCATCCGC GAATTCCTCT GCAGCGAGGC CATGCACGGC CTGGGCATCC CAACCACCCG CGCGCTCTGC GTCACGGGCT CCGACGCCCG CGTGTACCGC GAAATGCCCG AAACCGCCGC CGTCGTGACC CGCGTGGCGC CCAGCTTCAT CCGCTTCGGC CACTTCGAGC ACTTCTCGGC CAGCCAGCGC GATGCCGAGC TGCGCGCGCT GGCCGACTAC GTCATCGACC GCTACTACCC GGACTGCCGC AGCACCAGCC GCTTCAACGG CAATGCCTAC GCGGCCTTCC TGGAAGCCGT GAGCGAGCGC ACCGCCGCCC TGCTCGCGCA ATGGCAGGCC GTGGGCTTTT GCCACGGCGT GATGAACACC GACAACATGA GCATCCTCGG GCTCACCATC GACTACGGGC CGTTCCAGTT CCTGGACGGC TTCGATCCGC GCCACATCTG CAACCACAGC GACACCAGCG GCCGCTATGC CTTCAACCAG CAGCCCAACG TGGCCTACTG GAACCTGTTC TGCCTGGCGC AGGCGCTGTT GCCGTTGATC GGCGACCAGG AAATCGCCGT CGCCGCGCTG GAGTCCTACA AGACGGTGTT CCCGCGCGAG TTCGAGAGCC GCATGCGCGC CAAGCTCGGC CTCGCGGAGC CGGCCGAAGG CGATCGCGCG CTCATCGAGG GCGTGCTGAA GCTCATGGCC GCCGAAAAGG TCGACTACAC CATCTTCTGG CGCCGCCTTT CGCAGCACAT GGCGGGCGGC AACGCTGAAC CCGTGCGCGA CCTGTTCCTG GACCGTGCGG GCTTCGATGC CTGGCTGCTA TCCTTTTCAG AGCGGCACGC GCAATTGCCG CGCGCCCAAG CCGCGGACCT GATGCTCAGA TCGAATCCGA AGTACGTCTT GCGGAACCAC CTGGGCCAGC AGGCCATCGA AGCGGCCAGC CAGAAGGACT TCTCGGCTGT GGCAACCTTG TTGGCGCTGC TCGAAACCCC ATTTGAAGAA CATCCCGGTG CCGATGCCTA TGCCGGGTTC CCGCCCGACT GGGCCTCCAC GATCGAAATC AGCTGCTCAT CATGA
|
Protein sequence | MSLLAEDTAA ADLGLRWKPG FRALGPAFLT ELRPTPLPDP PYWVGHSEAA ARLLGLPADW RQSEGTLAAL TGNLPVAGTL PFATVYSGHQ FGVWAGQLGD GRAIMLGETE GGLEVQLKGA GRTPYSRGAD GRAVLRSSIR EFLCSEAMHG LGIPTTRALC VTGSDARVYR EMPETAAVVT RVAPSFIRFG HFEHFSASQR DAELRALADY VIDRYYPDCR STSRFNGNAY AAFLEAVSER TAALLAQWQA VGFCHGVMNT DNMSILGLTI DYGPFQFLDG FDPRHICNHS DTSGRYAFNQ QPNVAYWNLF CLAQALLPLI GDQEIAVAAL ESYKTVFPRE FESRMRAKLG LAEPAEGDRA LIEGVLKLMA AEKVDYTIFW RRLSQHMAGG NAEPVRDLFL DRAGFDAWLL SFSERHAQLP RAQAADLMLR SNPKYVLRNH LGQQAIEAAS QKDFSAVATL LALLETPFEE HPGADAYAGF PPDWASTIEI SCSS
|
| |