Gene Vapar_2892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2892 
Symbol 
ID7970781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3038141 
End bp3038773 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content73% 
IMG OID644793477 
Productprotein of unknown function DUF330 
Protein accessionYP_002944778 
Protein GI239815868 
COG category[S] Function unknown 
COG ID[COG3009] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.529816 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAACA GGAAAACGCT GCTTCCGCTC GCGGCCATCG CAGCGCTGAT GGTCCTCGCA 
GGCTGCGCGA GCAAGCCCGA CAACTACTAC ACGCTGGCCA GCGCGGTGCC GGCCGCCGAG 
GCGGCCCCGT CGACCCTCGG CACCGCGGCG CCGCTCTACA TCGAGCTGGC GCCGGTGGCG 
GTGCCCGAGC GGCTCGCGCG GCCGCAGATG GTGGTGGGCC GGCCGGGCGG CAGCGTGCAG 
GTCGACGTGC TCGAGCAGCA CCGCTGGGTC GCATCGTTCG AGAACGAGCT GCAGGACGCG 
CTGGCCAGCG GCATCGCGGC GCGGCTCGGT GCGCTCGATG TCAGCAAGGG CGGCCGCCCG 
TCCGCGCAGC CCGTGTGGCG CATCGCTGTG CAGGTGCGGC GGTTCGACGC GGTCGATGGC 
GGGCGCGTGG ATGCAGGCTT CAACTGGACG CTGCGGCGCT CCGACGAGCC GCGCACCGTG 
GTGTGCCAGC TGGACGCGGG TGAAGCGGTC GCAGGCGGCA TCGATGCGGT GGCGCAGGGC 
GCGCAGCGCA TCACCGCCGC GGCAGCCGCG GCCATTGCGC GCAGCGTGAA TGCGGCGCGG 
GCGAATCCGT CCGCGACCTT ATGTCCGGCC TGA
 
Protein sequence
MKNRKTLLPL AAIAALMVLA GCASKPDNYY TLASAVPAAE AAPSTLGTAA PLYIELAPVA 
VPERLARPQM VVGRPGGSVQ VDVLEQHRWV ASFENELQDA LASGIAARLG ALDVSKGGRP 
SAQPVWRIAV QVRRFDAVDG GRVDAGFNWT LRRSDEPRTV VCQLDAGEAV AGGIDAVAQG 
AQRITAAAAA AIARSVNAAR ANPSATLCPA