| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2867 |
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| Symbol | |
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| ID | 7970756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3013526 |
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| End bp | 3016171 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793452 |
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| Product | pentapeptide repeat protein |
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| Protein accession | YP_002944753 |
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| Protein GI | 239815843 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1357] Uncharacterized low-complexity proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.113451 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGACCA TCAAGCCCCT GCGCCTGAGC GTCCTGACGC GACCCTTCCT GCGCGCGCAA
AGCCAGCGTC TCGCACTCAC CGTGATCGGC ATGCACACCC TCGGCGAAGG GGGCGTGCTG
CTGCCGGAGA CGGAGCTCTG GAAGACCGTC TCTGCCGAAC TGGGAAACCA GTCCGCAATC
GATCTCGGCA TTCCCAAGCT GCGGCCCGAA TTCCTGGTGA GCGGCCAGGC CTACACCTGC
CACCAGCAGG ACAAGACACG CTGCGCGGTC GACCTGCGCG TCGGCACCTT GCGACGCCAG
TTCCTCGTTT CGGGCGACCG CTACTGGCTG GATGGCCGCG CCACCGAGCC GCAGGCTTTC
GACACCATGC GCCTGGACTG GCGGCACGCG TTCGGCGGCC CCGGCTTTGC CGCCAACCCC
GCGGGCATCG GGTACGCACC CGAGTTGGTC AATGGCCTGC TGGTGCAGCG GCTTCCCAAC
GTCGAACGCC CGGGCGATGG CATGGACCGC CCCGACCGCA GGCCGGTCCC GGCCTGCCCG
GGTGCGATGG ACGTCGATCT GCCCGAACGC CTGAAGCTGC TGGGAACGGA CTACGGCGAC
CAATGGCGCG AGACGCTCTA CCCCGGCTTT GCGCGCGACA TGGACTGGCA GTTCTTCAAC
GCCGCGGCTG CGGAACAGCG CTGGAACGAC GAACTGTCCA TTCCCGCAGC CGCGCCCTAC
GAGATCTGGA ACATGCACCC AGAGCATGCG GTACTGCGCG GACGGCTTCC GGATCTGCGC
GCGCGCGGCT TCGTGGCGAG AAAGTCTGCG CGGCCCCTTG CGCTGGAAGA GGTGCCGCTG
CGGCTTACCA CCGCCTGGTT CTTCCCGCAC ATGGCGCAGG TCATGCTGAT CTTTCACGGC
GAGACGCTCA TCGCCGAGGA CGACGCCGCG GACATCACGC ATGTCATGCC GGCGATGGAG
GCGGCAGACA GCCCGCTGCG CCCCCTCTCC CACTACGAGA AGGTCTTCGG GAATCGCTGC
AACCTGGAGA AAGGCGCGAT CCATGCGCTG CTCGACGAGG AACTGCTGCC GGCCTCGGCC
ATCGGCCCCT GGCTGGACCA GATCGACGCG CGCGAATCGA TCCTGGCAAG GAACATCAAG
GACAAGGGCG AGCGCCTGCG CGCCGAACTG ACGGCGCGCG GCCTGGAGGC CGGCCACAAG
GCGCGCCATT TCCGGGAACG GCCCCTGCCG AAGCCTTTCG ACAAGATGCC CACGCTGGCC
GAACTGCCCG AGTTCATCGA CAAGACACGC GCCTACCAGC GCGAACAGGA ACGCAAGCTG
GAGGAAGCCA GGCAGGAGGT CGCGAAGGCG GCCCGGGACA ACGCGTCCGA ATCGCGCAAG
GCGGGCTTCG ACAGCAGCCG GATCACCGAG GAAAGCCGGA ACGCGCAGCT CAAGGGCCCG
CCGAAATTCG AGGCCGAGAC GATCGTCAAG GGCCTGGCCG GCATCGCCGC GGCCACGGGC
GCCCCGGCCA TGAGCGCCGC CGAGCACGCC GAGCTGCAGG CCATGGGGCA GCGGGGCCGG
CAGGACATGC TGACGCTGTA CCGCATGGCG GCCCACCACC AGGCCGCTGC CGATCCGATG
GCTGCCGAAC AGAATGCGCA GACGCGCGAA CGCGTGCTCG CCGCCATGGC CGCGGACCGC
GATCTGTCCG CCATGGACCT GACGGGCTGC GACCTGTCGG GCCTCGATCT GCGGGGCGCC
CGCATGCACC AGACCTTGCT CGAAGGCGCC CGCCTCCAGG GCGCCCGCCT GGATGGCGCC
GACCTGAGCC AATCGGTGCT GGTGCGCGCC GACCTGCGCC AGGCCTCGTT GACGGGCTGC
AACCTGGAGC GTGCCAACCT CAGCCTCGCG CGCTGCGAAA ACACCAACTT CGCGCAGGCC
CGCTTCGAGC GCACGCAGAT GGAAAAGCTG CGCCTCGACG GCTGCTGTCT CGACGAAGCG
AGGTGGAGCC ATCTGTTGCT GCAGGGGATC GAACTCGCGG ATTGCAGCCT GCGGCGCGCC
GACCTCCGCT ACGTGAGCAT GGCCGAACAC TGCCGGCTGG CGCGCTGCGA CTTCGGCGAG
GCACGCCTGG AAAAGGTGCT GTTCGTGCAG GCCGAATTCG AGTCGGTGGA TTTTTCCGGC
GCCACCGTCG AAGCCTGCAG CTGGGCCCAC ACGCCGCTGC ACAAGGGCAT CCGGTTTCGG
CATGCCATGC TCAAGACCAC CAGCTTCGTC GGCACCACGG ATCTTCGCGA GGCCGACTTC
GAGGATGCCA CGCTGGTGCA TTGCACCCTG CGCGAGCTGC CTCTCGATGG CGCGAACTTC
AGGCGGGCGA CGCTCGATAC CTGCGATTTC TCCTCCGCGT CGCTCAAGGG CGCGGACCTG
CGCGCGGCGG CCGCGCCCGA CAGCCTCTTC ATCCGCGCCG ATTTCACGCG TGCCTCCCTG
CGGCTCGCCA ATCTCATGAA TGCCAACCTT CAGAAGGCCT GCCTGGTCGA TGCCGACCTG
GGCGAGGCCA ACCTGTTCCG TGCCGATGTC TCCCAGATCC TCATCACCCC CGGCACGATC
ACCCTGGGTG CCCACATCGA CCAGATAAAG ACACTGCCCC GGCGCCCCGA GGCGGGCGGC
GCGTGA
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| Protein sequence | MKTIKPLRLS VLTRPFLRAQ SQRLALTVIG MHTLGEGGVL LPETELWKTV SAELGNQSAI
DLGIPKLRPE FLVSGQAYTC HQQDKTRCAV DLRVGTLRRQ FLVSGDRYWL DGRATEPQAF
DTMRLDWRHA FGGPGFAANP AGIGYAPELV NGLLVQRLPN VERPGDGMDR PDRRPVPACP
GAMDVDLPER LKLLGTDYGD QWRETLYPGF ARDMDWQFFN AAAAEQRWND ELSIPAAAPY
EIWNMHPEHA VLRGRLPDLR ARGFVARKSA RPLALEEVPL RLTTAWFFPH MAQVMLIFHG
ETLIAEDDAA DITHVMPAME AADSPLRPLS HYEKVFGNRC NLEKGAIHAL LDEELLPASA
IGPWLDQIDA RESILARNIK DKGERLRAEL TARGLEAGHK ARHFRERPLP KPFDKMPTLA
ELPEFIDKTR AYQREQERKL EEARQEVAKA ARDNASESRK AGFDSSRITE ESRNAQLKGP
PKFEAETIVK GLAGIAAATG APAMSAAEHA ELQAMGQRGR QDMLTLYRMA AHHQAAADPM
AAEQNAQTRE RVLAAMAADR DLSAMDLTGC DLSGLDLRGA RMHQTLLEGA RLQGARLDGA
DLSQSVLVRA DLRQASLTGC NLERANLSLA RCENTNFAQA RFERTQMEKL RLDGCCLDEA
RWSHLLLQGI ELADCSLRRA DLRYVSMAEH CRLARCDFGE ARLEKVLFVQ AEFESVDFSG
ATVEACSWAH TPLHKGIRFR HAMLKTTSFV GTTDLREADF EDATLVHCTL RELPLDGANF
RRATLDTCDF SSASLKGADL RAAAAPDSLF IRADFTRASL RLANLMNANL QKACLVDADL
GEANLFRADV SQILITPGTI TLGAHIDQIK TLPRRPEAGG A
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