| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2865 |
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| Symbol | |
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| ID | 7970754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3010729 |
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| End bp | 3013071 |
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| Gene Length | 2343 bp |
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| Protein Length | 780 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793450 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002944751 |
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| Protein GI | 239815841 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACGTA CCGTCCAGGT TCACACCGTA CTCAACGCCG AGCAGTTGAA GTTCCGCGCG
ATGCGGGGAC AGGAAGGCCT CTCGCAGCTG TTCGAGTTCG AGGTCGACAT GGTCAGCCCC
AGCTTCAACC TCGACCTGAA GAAGCTGCTG GGCACTTCGC TCACGCTCGA ACTGCAGGAC
GAAGGCGCAT CGCGCTTTCT CAACGGCACC GTGGTGCGCT TCGAGCTCGT GGGCCGCGCC
AACGAAACCG GCCGCCACTA CATCTACCGT GCGCTGGTGC AGCCCTGGCT CTGGTACCTC
ACGCGCACCA CCGACTGCCG CATCTTCCAG AACAAGAGCG TGCCCAACGT GCTCGACGAA
GTGCTCGGCA AATACGGCTT CGAATACGAG AAGCGCCTCA GCGGCAGCTA CCGCCCATGG
GAATACTGCG TGCAGTACCA GGAGAGCGAC TTCGCCTTCG TCTGCCGCCT CATGGAGCAC
GAGGGCATCG CCTACCACTT CGAGCACCGC AACGGCTCGC ACCTGCTGGT GCTGGCCGAC
GACATCGGCG GCTATAGCAC CCTGCCGGGC CATGCCACCA TTGCCTACCG TCCACGCGAC
CGCGTGGTGA ACGCCATGGA GCCCTGCATC GACCAGTGGC GCATCTCCGA GCAGATCACC
TCGGGCCGCG TGATGCTCGA CGACTTCGAC TTCAGGAAGT CGCGCGCCTC GCTCCAGAGC
GTGCAGCAGG ACCCGAAGGG CCACGACCAC TCGAGCTACG AAGTCTATGA ATGGCTGGGC
GGCTACAGCG AGAACGACCA GGGCGACAGC TACGCGAAGA TCCGCCTGCA GGAGCTGCAG
TGCGCGCACG AACTGGCCAC GGGGCACACC AACGTGGCGG GCATGGCGCC CGGCTACCTG
TTCCAGATGA CGCACTGCCC GCGCGAGGCC GACAACCGCG AATACCTCGT CACGCAGACC
CGCTACGACC TGCAGGAGCC CGAGTACGCG ACCGGCGGCA CGGCCGAATC GGTGTGCGAG
TTCGACTTCA CCGTGCTGCC TTCCAGCGTG CCCTACCGCC CTGCGCGCAA GACGCCCAAG
CCGCGCACCA GCGGCCCGCA GACCGCCACC GTGGTCGGCC CCGAAGAGAT CTGGACCGAC
CGCTTCGGCC GCGTGAAGCT GCAGTTCCGC TGGGACCGCT ACGGCCAGTC GGACGAGAAC
AGCTCGTGCT GGGTGCGCGT GTCGAGCAAC TGGGCCGGCG CCAACTACGG CACCATGCAC
ATGCCGCGCG TGGGCCAGGA AGTGATCGTC GATTTCATCG GCGGCGAACC CGACCGACCC
ATCATCACCG GCCGCGTCTA CAACAACGAC CAGATGCCGC CGTGGGAGCT GCCCGCCAAT
GCCACGGCCA GCGGCATCCT CACGCGCTCG AGCAGCGGCG GCGCGGCCAA CCAGGCCAAC
ATGCTGCGCT TCGAGGACCG CAGCGGCGCC GAGCAGATCC TGCTGCATGC CGAGCGCAAC
CTCGACGTGG AGGTGGAAGC CGACGAAACG CACACCACCG GCGGCACCCG CACCACCCTC
GTCAAGGGCC ACGAGTCGGC CACCTACCAG AGCGGCGAGA CGCGCGACAT CACCGCGGGC
GCGAAAGAAA CCATCACCGG CGGCGACACG CGCGACGTGA CCGGCGGCTT CAGCGAAACG
GTCAGCGGCG GCGTCACGCA GACCATTTCG GGCGGCAAGA AGCGCACGCT CAGCGGCGGG
CTGAACGACA CCATCAGCGG CGGCGTCAAC CTTGCGATCA CCGGCGGCTT CCACGGCACC
ATCGATGGAC GGGAGATCCG CTTCGTGAGC GGCGGACGCA ACGACACCAT CGACACCTCG
AACACCGTGC TGGTCAACGG CCCCTCGAAC ACCACGGTGA CCGGCCCGAC GGTGCACACC
TCCCCGGATG TGACCTTCAA CACAACGAAC CACATCCACA ACACCACGCA GCACGTCATC
AACACCAACG TCTACAACAC GACGTCCAAC ACCTACAACA ACCTGACCAA CAACTACACG
AACAACTCGG TCAGCTACAC CAACAACTAC TCCAAGAGCA GCGACTGGAG GTGGTTCCGC
CTGGGCGGCA CCGGCCTGAA CATGGACGTG TCGGGCATTT CGCTGGGCGT GGTGGCCGTG
CGTTCGATGG CCATCGGCGT GCAGGCGCAG GCCATCGGCG TGAAGCTGGA GGCTGTGGGC
GCGGAGTGGA AGAACAAGGC AATGTCGCTG GGGGATGCCG GTGCGCTCAT CCAGCTCGTG
GGCACGGAGA TCAAGACGGG CGGCCTGCGC GCCGGCATCC AGGCGCTCAA GATCCTGCTC
TGA
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| Protein sequence | MPRTVQVHTV LNAEQLKFRA MRGQEGLSQL FEFEVDMVSP SFNLDLKKLL GTSLTLELQD
EGASRFLNGT VVRFELVGRA NETGRHYIYR ALVQPWLWYL TRTTDCRIFQ NKSVPNVLDE
VLGKYGFEYE KRLSGSYRPW EYCVQYQESD FAFVCRLMEH EGIAYHFEHR NGSHLLVLAD
DIGGYSTLPG HATIAYRPRD RVVNAMEPCI DQWRISEQIT SGRVMLDDFD FRKSRASLQS
VQQDPKGHDH SSYEVYEWLG GYSENDQGDS YAKIRLQELQ CAHELATGHT NVAGMAPGYL
FQMTHCPREA DNREYLVTQT RYDLQEPEYA TGGTAESVCE FDFTVLPSSV PYRPARKTPK
PRTSGPQTAT VVGPEEIWTD RFGRVKLQFR WDRYGQSDEN SSCWVRVSSN WAGANYGTMH
MPRVGQEVIV DFIGGEPDRP IITGRVYNND QMPPWELPAN ATASGILTRS SSGGAANQAN
MLRFEDRSGA EQILLHAERN LDVEVEADET HTTGGTRTTL VKGHESATYQ SGETRDITAG
AKETITGGDT RDVTGGFSET VSGGVTQTIS GGKKRTLSGG LNDTISGGVN LAITGGFHGT
IDGREIRFVS GGRNDTIDTS NTVLVNGPSN TTVTGPTVHT SPDVTFNTTN HIHNTTQHVI
NTNVYNTTSN TYNNLTNNYT NNSVSYTNNY SKSSDWRWFR LGGTGLNMDV SGISLGVVAV
RSMAIGVQAQ AIGVKLEAVG AEWKNKAMSL GDAGALIQLV GTEIKTGGLR AGIQALKILL
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