Gene Vapar_2844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2844 
Symbol 
ID7970733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2987560 
End bp2991633 
Gene Length4074 bp 
Protein Length1357 aa 
Translation table11 
GC content71% 
IMG OID644793429 
Productouter membrane autotransporter barrel domain protein 
Protein accessionYP_002944730 
Protein GI239815820 
COG category 
COG ID 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.241851 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAACA TTCATTGCAG CGTCTGGAAC GCTGCGCTGG GCGCGTGGGT GGCCGTTTCG 
GAGCTTTCGC GGCGGCGCGC GCGGGGGGCT TCTGTTTCTT CTTCGGCCGC GGCGGCCGTG
TGCCTGCTGG CGCTTGCGAG CCTGCCGGGA ACGGCCTCCG CGCAGGCCGC CGGCGGCGGC
GCAGCCATGG TGGCCGGAGG CACCGGCGGC CGCGGCGGCG CGGGAAATGG CGCCGGCGCC
GGGGGCGGCA GCGTCGGCGA GTACCCCACC AGCAACGGAC AGCCGCCGAC AGCCGGAGCC
GGGGGTGCTG GCGGCAACGG TGCGGCGGGG GCTGGCGGTA CGGGCGGCGC GGTAGGCGCC
ACCAGTGCCG CGGGCTCCGC CACTGGGGCG TCGGGAACCA ACGGCGTTGC CGACCCCGAC
CCTGTCTATG GCGCCGGCGG TGGCGGCGGT GGGGGTGCGG CCGTGTACAC CACCGACACA
TCCATCACCG TGGTAGGTGG GACCACTCTC CTGGGTGGCA ACGGCGGCAA CGGTGGCATT
GGGCGCTTGT CCGGCGGCGG CGGCGGTGGC GGCGCGGGCC TTCAGGCCGT CGCCGCGAAT
GCAGTGGTCA ACAATGCGAG CCTGACGGTC ACGGGCGGCA ATGGGGGCAA CGGAGGCGTC
GGCCAATGGG CCGGCGGCGG TGGCGGCGGC GGCGATGGCA TCGTGTTGCA AGGCGGAGGC
GCCATTGTCA ACAACACCGG CACGGCCACG GGCGGAAATG GCGGAAGTGG CGGCACCGTC
ACCACCGGCG GCCTGGTGGG CGGCGGCGGC GAAGGCGGTG CCGGCATGGC GCTGGAGTCC
AGCGGCAACT CGGTGCTCAA TACCGGCGCG CTGGTGGGAG GTGCGGGCGG TGCCGGCGGA
AGCAGCGCTG CCAACGGCAT CGGCGGTGCG GGCCTGCGCA TCCGCGGCAA CACGAACACC
ATCGTCAACA CCGGCATCTT GACCGGGGGT CTCGCCGGCG ACGGCGCTAC GCGTGGCGAT
GCGGTGCGCA TCACCGGCAA CGACAACTCG CTCGAACTGC AGGGCGGCTC GGTGATCACC
GGGACACTGA CTGCGAACGG CATCGGCAAT GTGCTGCGCC TGGCCGGCGC GCTGACCGAT
GGAACCACCT CGCTTGACGC CGCCACCTAC CGCGGCTTCG ACCGCTACGA GAAGACGGGC
GCCAGCACCT GGACGCTGAC CGGCACCACC ACCGAACTGA CGCCCTGGCA CGTGCTGGGC
GGCACGCTCG CCATTGCCGA CGACGCCGCC CTCGGCAGCT CGGCCGGCAC GCTCACGCTC
GACGGCGGCA CCTTGCGCGC CACCGGCACG ACCGCCGGCA CGCGCAATGT CACGGTGGGC
GCGGGCGGTG CGGCTTTCGA GATTGATCCT GCGCAGGCGC TGACGCTCAA CGGCGTGCTT
TCCGGCAGCG GCAGCCTGCA AAAGACCGGC GCCGGCACGC TGGTGCTCGG CGCGGCCAAC
AACTACAGCG GCGGCACCCT TGTCAACGAC GGGTCGTTGA TCGCGACAGC CAGCGGAGCC
CTGGGCAGCG GACCCGTCAT CGTCAACGCG TCGCTCACGT TCGAGACCGG CGTGAATGCG
GGATCGCTGT CCATCACCAA CCAGAACGGC TACACCCGAT TCAACGGCAC CAGCACCGCA
GGCACGGCCA GCATCGTCAA CAACAACGGC AGCGGCACCG ACTTCTATGG CGACAGCCGC
GCAGGCACGG CAAGCATCAC CAACAATGAC TACGCTTTCA CGTACTTCCG CGAGACTGCA
TCGGCGGAGC AGGCGACGAT CCTGAACCCC TCGGGCACCA CCTTCTTCAT CCAGAACGCC
ACGGCCGGCA ACGCCAACAT CGACAACAGC GGCGGGCAGG CGCGTTTCTA CGACAGCAGC
AGCGCGGGCT CCGCGAACAT CATCAATCGC AGCGGCGGCA TCACCTATTT CGTGAACACC
AGCAGCGCCG AAAGCGCCAC CATCGACAAC CGCGCCGGAG GCAGTGTCGA TGCGTCGTAC
CACACAGGCG GGCTCTCGAT CGGTGCGCTG TCAGGCGCCG GGCGCCTGCT TCTGGGCGCC
GAGGCCGTCA GCGTGGGGGC GCTGGGCACG AACACGACGA TCAGCGGCGT GATCGCCGAT
GGCGGCGAGA ACGGCGGCAC CGGCGGCTCG CTCGTGAAGG TCGGCACCGG CACCTTGACG
CTCTCCAGCG CCAACACCTA CACCGGCGGC ACCGCGCTGA AGCAGGGCCG CCTCGACCTC
GGCCACAGCC AGGCGCTGGG CACCGGCACG CTGGCCATGG ACGACGGCAC TACGCTGGGC
TTCAGCGCCA ACGGACTGAC CATCGCCAAC GCCATCGAGC TGACCGGCAG CAACGATCCC
GTCATCGACA CGGGCGCCTT CAGCGAAACG CTCAGCGGCG CGATCAGTGG AGGCGGCTTC
ATCACCAAGC AGGGCAGCGG CACGCTCACG CTGGCGGGCG CCAACACCTA CACCGGTGCC
ACCAACGTGG CCCAGGGCAC CTTGCGCGCC GGCGCGGCCA ACACCTTCAG CGCGAGCTCC
GCGCACAGCG TGGCGGCCGG CGCCACGCTG GACCTCGCGG GCTTCAGCCA GACGGTGGCC
TCGCTCGCCA ACAGCGGCAC CGTGTCGCTG GTCGGCAGCG CGCCGGGCAC CACCTTGACC
GTCAGCGGGC CCTACATCGG CAACAACGGC GTGCTGCGCC TGGGCACCGC GTTGGGCGCC
GATGGCAGCG CCAGCGACCG GCTGGTGCTC GACGGACCCA CTGCCGCTGC CAGCGGCAGC
ACCACGGTGC AGGTCACCAA CCTGAGCGGC CTGGGCGCAC TCACCAGCGG CAACGGCATC
GAGGTGATCA GTGCACGCAA CGGCGCCACC ACCACCGCGC AGACCACGAA GAACGCCTTC
TCGCTCGCGG GTGGCCATGT GGATGCGGGC GCCTACGAGT ACCGCCTGCA TGCCGCCGAT
GCGGGTGGGG CAGGGGAGAA CTGGTACCTG CGCTCCACCA CGAACGTGGC CCCGCCGGCC
GATCCCGTGG CGCCTCCGGC CGCACCGCCT GTGGTGGTGC CCACCTACCG CGCCGAGGCC
TCGCTCTACG CGGCGCTGCC GAGCCAACTG CGCCAGGGCA GCCTCGCGAT GCTGGGCGAC
CTGCGCAAGC GCGTGGGCGA CGACGATGTG AAGGGCACGG CCGCGGCGCC GGCGGGTTCG
CAGCGCCGCG CCTGGGCACG CGTGCTCTCC ACCGACATCG ACATCCGGCA GGGCGGCACG
GTCTCGCCCA CCAGCAAGGG GCGCCTGACC GGCGTCCAGG CCGGCACCGA CCTGCTGGCC
GCACCCAACT GGCGCGCCGG CCTCTACGTG GGCCAGCTCG ACGGCGATGC GCGCGTCAAC
GGCTTTGCCA GCGGCTTGCA GAACCTGCGC GTGGGCCGCA ACGACCTGCG CAGCCAGTAC
GTGGGCATCT ACGGCACCTA CAGCGGCGAC AGCGGCCTGT ATGCCGACGC CGTGGTGCAG
TCGGGCCGGC ACCGCTACAC GGTGCAGCCG AACCTCGGCG GCGGCGTGGA AGGCAAGGGC
CACAGCCTGC TGGGCTCGAT CGAAGTGGGC CAGGCCTTCG CGCTGGGCGC GAGCGGCTGG
AGCGTGGAGC CGCAGCTGCA ATTGATCCAC CAGCACCTGG ACCTGAACAA CTCGGCCATC
GTCGGCGCGG TGGTCCAGTC CGAGGCCGAC AGCGGCTGGA TCGCACGCGC GGGCATCCGC
GTGAAGGGCG AGCTCGCCAC CGGCCTGGGC ACGCTGCAGC CGTACGGCCG CTTCAACGTC
TACAAGAGCT CGAGCGGCGC GGACGTGGCG AGCTTCGTGA ACGGCGCCAC ACGCACCGAC
ATCGCGGCGC CGACCGGCGG CACCAGCACC GAGCTGGCGG GCGGCTTCAC GCTGGCGCTG
GGCAACACCA CCAGCCTGTA CGGCGAAGTG GGCAAGCTCT GGTCCTCGGG GGGCGGCGAC
GCCAAGGTGA AGAGCTCGGT CAACGCGTCG CTCGGCGTGC GGGTCAAGTG GTGA
 
Protein sequence
MNNIHCSVWN AALGAWVAVS ELSRRRARGA SVSSSAAAAV CLLALASLPG TASAQAAGGG 
AAMVAGGTGG RGGAGNGAGA GGGSVGEYPT SNGQPPTAGA GGAGGNGAAG AGGTGGAVGA
TSAAGSATGA SGTNGVADPD PVYGAGGGGG GGAAVYTTDT SITVVGGTTL LGGNGGNGGI
GRLSGGGGGG GAGLQAVAAN AVVNNASLTV TGGNGGNGGV GQWAGGGGGG GDGIVLQGGG
AIVNNTGTAT GGNGGSGGTV TTGGLVGGGG EGGAGMALES SGNSVLNTGA LVGGAGGAGG
SSAANGIGGA GLRIRGNTNT IVNTGILTGG LAGDGATRGD AVRITGNDNS LELQGGSVIT
GTLTANGIGN VLRLAGALTD GTTSLDAATY RGFDRYEKTG ASTWTLTGTT TELTPWHVLG
GTLAIADDAA LGSSAGTLTL DGGTLRATGT TAGTRNVTVG AGGAAFEIDP AQALTLNGVL
SGSGSLQKTG AGTLVLGAAN NYSGGTLVND GSLIATASGA LGSGPVIVNA SLTFETGVNA
GSLSITNQNG YTRFNGTSTA GTASIVNNNG SGTDFYGDSR AGTASITNND YAFTYFRETA
SAEQATILNP SGTTFFIQNA TAGNANIDNS GGQARFYDSS SAGSANIINR SGGITYFVNT
SSAESATIDN RAGGSVDASY HTGGLSIGAL SGAGRLLLGA EAVSVGALGT NTTISGVIAD
GGENGGTGGS LVKVGTGTLT LSSANTYTGG TALKQGRLDL GHSQALGTGT LAMDDGTTLG
FSANGLTIAN AIELTGSNDP VIDTGAFSET LSGAISGGGF ITKQGSGTLT LAGANTYTGA
TNVAQGTLRA GAANTFSASS AHSVAAGATL DLAGFSQTVA SLANSGTVSL VGSAPGTTLT
VSGPYIGNNG VLRLGTALGA DGSASDRLVL DGPTAAASGS TTVQVTNLSG LGALTSGNGI
EVISARNGAT TTAQTTKNAF SLAGGHVDAG AYEYRLHAAD AGGAGENWYL RSTTNVAPPA
DPVAPPAAPP VVVPTYRAEA SLYAALPSQL RQGSLAMLGD LRKRVGDDDV KGTAAAPAGS
QRRAWARVLS TDIDIRQGGT VSPTSKGRLT GVQAGTDLLA APNWRAGLYV GQLDGDARVN
GFASGLQNLR VGRNDLRSQY VGIYGTYSGD SGLYADAVVQ SGRHRYTVQP NLGGGVEGKG
HSLLGSIEVG QAFALGASGW SVEPQLQLIH QHLDLNNSAI VGAVVQSEAD SGWIARAGIR
VKGELATGLG TLQPYGRFNV YKSSSGADVA SFVNGATRTD IAAPTGGTST ELAGGFTLAL
GNTTSLYGEV GKLWSSGGGD AKVKSSVNAS LGVRVKW