Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2844 |
Symbol | |
ID | 7970733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2987560 |
End bp | 2991633 |
Gene Length | 4074 bp |
Protein Length | 1357 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644793429 |
Product | outer membrane autotransporter barrel domain protein |
Protein accession | YP_002944730 |
Protein GI | 239815820 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain [TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.241851 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAACA TTCATTGCAG CGTCTGGAAC GCTGCGCTGG GCGCGTGGGT GGCCGTTTCG GAGCTTTCGC GGCGGCGCGC GCGGGGGGCT TCTGTTTCTT CTTCGGCCGC GGCGGCCGTG TGCCTGCTGG CGCTTGCGAG CCTGCCGGGA ACGGCCTCCG CGCAGGCCGC CGGCGGCGGC GCAGCCATGG TGGCCGGAGG CACCGGCGGC CGCGGCGGCG CGGGAAATGG CGCCGGCGCC GGGGGCGGCA GCGTCGGCGA GTACCCCACC AGCAACGGAC AGCCGCCGAC AGCCGGAGCC GGGGGTGCTG GCGGCAACGG TGCGGCGGGG GCTGGCGGTA CGGGCGGCGC GGTAGGCGCC ACCAGTGCCG CGGGCTCCGC CACTGGGGCG TCGGGAACCA ACGGCGTTGC CGACCCCGAC CCTGTCTATG GCGCCGGCGG TGGCGGCGGT GGGGGTGCGG CCGTGTACAC CACCGACACA TCCATCACCG TGGTAGGTGG GACCACTCTC CTGGGTGGCA ACGGCGGCAA CGGTGGCATT GGGCGCTTGT CCGGCGGCGG CGGCGGTGGC GGCGCGGGCC TTCAGGCCGT CGCCGCGAAT GCAGTGGTCA ACAATGCGAG CCTGACGGTC ACGGGCGGCA ATGGGGGCAA CGGAGGCGTC GGCCAATGGG CCGGCGGCGG TGGCGGCGGC GGCGATGGCA TCGTGTTGCA AGGCGGAGGC GCCATTGTCA ACAACACCGG CACGGCCACG GGCGGAAATG GCGGAAGTGG CGGCACCGTC ACCACCGGCG GCCTGGTGGG CGGCGGCGGC GAAGGCGGTG CCGGCATGGC GCTGGAGTCC AGCGGCAACT CGGTGCTCAA TACCGGCGCG CTGGTGGGAG GTGCGGGCGG TGCCGGCGGA AGCAGCGCTG CCAACGGCAT CGGCGGTGCG GGCCTGCGCA TCCGCGGCAA CACGAACACC ATCGTCAACA CCGGCATCTT GACCGGGGGT CTCGCCGGCG ACGGCGCTAC GCGTGGCGAT GCGGTGCGCA TCACCGGCAA CGACAACTCG CTCGAACTGC AGGGCGGCTC GGTGATCACC GGGACACTGA CTGCGAACGG CATCGGCAAT GTGCTGCGCC TGGCCGGCGC GCTGACCGAT GGAACCACCT CGCTTGACGC CGCCACCTAC CGCGGCTTCG ACCGCTACGA GAAGACGGGC GCCAGCACCT GGACGCTGAC CGGCACCACC ACCGAACTGA CGCCCTGGCA CGTGCTGGGC GGCACGCTCG CCATTGCCGA CGACGCCGCC CTCGGCAGCT CGGCCGGCAC GCTCACGCTC GACGGCGGCA CCTTGCGCGC CACCGGCACG ACCGCCGGCA CGCGCAATGT CACGGTGGGC GCGGGCGGTG CGGCTTTCGA GATTGATCCT GCGCAGGCGC TGACGCTCAA CGGCGTGCTT TCCGGCAGCG GCAGCCTGCA AAAGACCGGC GCCGGCACGC TGGTGCTCGG CGCGGCCAAC AACTACAGCG GCGGCACCCT TGTCAACGAC GGGTCGTTGA TCGCGACAGC CAGCGGAGCC CTGGGCAGCG GACCCGTCAT CGTCAACGCG TCGCTCACGT TCGAGACCGG CGTGAATGCG GGATCGCTGT CCATCACCAA CCAGAACGGC TACACCCGAT TCAACGGCAC CAGCACCGCA GGCACGGCCA GCATCGTCAA CAACAACGGC AGCGGCACCG ACTTCTATGG CGACAGCCGC GCAGGCACGG CAAGCATCAC CAACAATGAC TACGCTTTCA CGTACTTCCG CGAGACTGCA TCGGCGGAGC AGGCGACGAT CCTGAACCCC TCGGGCACCA CCTTCTTCAT CCAGAACGCC ACGGCCGGCA ACGCCAACAT CGACAACAGC GGCGGGCAGG CGCGTTTCTA CGACAGCAGC AGCGCGGGCT CCGCGAACAT CATCAATCGC AGCGGCGGCA TCACCTATTT CGTGAACACC AGCAGCGCCG AAAGCGCCAC CATCGACAAC CGCGCCGGAG GCAGTGTCGA TGCGTCGTAC CACACAGGCG GGCTCTCGAT CGGTGCGCTG TCAGGCGCCG GGCGCCTGCT TCTGGGCGCC GAGGCCGTCA GCGTGGGGGC GCTGGGCACG AACACGACGA TCAGCGGCGT GATCGCCGAT GGCGGCGAGA ACGGCGGCAC CGGCGGCTCG CTCGTGAAGG TCGGCACCGG CACCTTGACG CTCTCCAGCG CCAACACCTA CACCGGCGGC ACCGCGCTGA AGCAGGGCCG CCTCGACCTC GGCCACAGCC AGGCGCTGGG CACCGGCACG CTGGCCATGG ACGACGGCAC TACGCTGGGC TTCAGCGCCA ACGGACTGAC CATCGCCAAC GCCATCGAGC TGACCGGCAG CAACGATCCC GTCATCGACA CGGGCGCCTT CAGCGAAACG CTCAGCGGCG CGATCAGTGG AGGCGGCTTC ATCACCAAGC AGGGCAGCGG CACGCTCACG CTGGCGGGCG CCAACACCTA CACCGGTGCC ACCAACGTGG CCCAGGGCAC CTTGCGCGCC GGCGCGGCCA ACACCTTCAG CGCGAGCTCC GCGCACAGCG TGGCGGCCGG CGCCACGCTG GACCTCGCGG GCTTCAGCCA GACGGTGGCC TCGCTCGCCA ACAGCGGCAC CGTGTCGCTG GTCGGCAGCG CGCCGGGCAC CACCTTGACC GTCAGCGGGC CCTACATCGG CAACAACGGC GTGCTGCGCC TGGGCACCGC GTTGGGCGCC GATGGCAGCG CCAGCGACCG GCTGGTGCTC GACGGACCCA CTGCCGCTGC CAGCGGCAGC ACCACGGTGC AGGTCACCAA CCTGAGCGGC CTGGGCGCAC TCACCAGCGG CAACGGCATC GAGGTGATCA GTGCACGCAA CGGCGCCACC ACCACCGCGC AGACCACGAA GAACGCCTTC TCGCTCGCGG GTGGCCATGT GGATGCGGGC GCCTACGAGT ACCGCCTGCA TGCCGCCGAT GCGGGTGGGG CAGGGGAGAA CTGGTACCTG CGCTCCACCA CGAACGTGGC CCCGCCGGCC GATCCCGTGG CGCCTCCGGC CGCACCGCCT GTGGTGGTGC CCACCTACCG CGCCGAGGCC TCGCTCTACG CGGCGCTGCC GAGCCAACTG CGCCAGGGCA GCCTCGCGAT GCTGGGCGAC CTGCGCAAGC GCGTGGGCGA CGACGATGTG AAGGGCACGG CCGCGGCGCC GGCGGGTTCG CAGCGCCGCG CCTGGGCACG CGTGCTCTCC ACCGACATCG ACATCCGGCA GGGCGGCACG GTCTCGCCCA CCAGCAAGGG GCGCCTGACC GGCGTCCAGG CCGGCACCGA CCTGCTGGCC GCACCCAACT GGCGCGCCGG CCTCTACGTG GGCCAGCTCG ACGGCGATGC GCGCGTCAAC GGCTTTGCCA GCGGCTTGCA GAACCTGCGC GTGGGCCGCA ACGACCTGCG CAGCCAGTAC GTGGGCATCT ACGGCACCTA CAGCGGCGAC AGCGGCCTGT ATGCCGACGC CGTGGTGCAG TCGGGCCGGC ACCGCTACAC GGTGCAGCCG AACCTCGGCG GCGGCGTGGA AGGCAAGGGC CACAGCCTGC TGGGCTCGAT CGAAGTGGGC CAGGCCTTCG CGCTGGGCGC GAGCGGCTGG AGCGTGGAGC CGCAGCTGCA ATTGATCCAC CAGCACCTGG ACCTGAACAA CTCGGCCATC GTCGGCGCGG TGGTCCAGTC CGAGGCCGAC AGCGGCTGGA TCGCACGCGC GGGCATCCGC GTGAAGGGCG AGCTCGCCAC CGGCCTGGGC ACGCTGCAGC CGTACGGCCG CTTCAACGTC TACAAGAGCT CGAGCGGCGC GGACGTGGCG AGCTTCGTGA ACGGCGCCAC ACGCACCGAC ATCGCGGCGC CGACCGGCGG CACCAGCACC GAGCTGGCGG GCGGCTTCAC GCTGGCGCTG GGCAACACCA CCAGCCTGTA CGGCGAAGTG GGCAAGCTCT GGTCCTCGGG GGGCGGCGAC GCCAAGGTGA AGAGCTCGGT CAACGCGTCG CTCGGCGTGC GGGTCAAGTG GTGA
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Protein sequence | MNNIHCSVWN AALGAWVAVS ELSRRRARGA SVSSSAAAAV CLLALASLPG TASAQAAGGG AAMVAGGTGG RGGAGNGAGA GGGSVGEYPT SNGQPPTAGA GGAGGNGAAG AGGTGGAVGA TSAAGSATGA SGTNGVADPD PVYGAGGGGG GGAAVYTTDT SITVVGGTTL LGGNGGNGGI GRLSGGGGGG GAGLQAVAAN AVVNNASLTV TGGNGGNGGV GQWAGGGGGG GDGIVLQGGG AIVNNTGTAT GGNGGSGGTV TTGGLVGGGG EGGAGMALES SGNSVLNTGA LVGGAGGAGG SSAANGIGGA GLRIRGNTNT IVNTGILTGG LAGDGATRGD AVRITGNDNS LELQGGSVIT GTLTANGIGN VLRLAGALTD GTTSLDAATY RGFDRYEKTG ASTWTLTGTT TELTPWHVLG GTLAIADDAA LGSSAGTLTL DGGTLRATGT TAGTRNVTVG AGGAAFEIDP AQALTLNGVL SGSGSLQKTG AGTLVLGAAN NYSGGTLVND GSLIATASGA LGSGPVIVNA SLTFETGVNA GSLSITNQNG YTRFNGTSTA GTASIVNNNG SGTDFYGDSR AGTASITNND YAFTYFRETA SAEQATILNP SGTTFFIQNA TAGNANIDNS GGQARFYDSS SAGSANIINR SGGITYFVNT SSAESATIDN RAGGSVDASY HTGGLSIGAL SGAGRLLLGA EAVSVGALGT NTTISGVIAD GGENGGTGGS LVKVGTGTLT LSSANTYTGG TALKQGRLDL GHSQALGTGT LAMDDGTTLG FSANGLTIAN AIELTGSNDP VIDTGAFSET LSGAISGGGF ITKQGSGTLT LAGANTYTGA TNVAQGTLRA GAANTFSASS AHSVAAGATL DLAGFSQTVA SLANSGTVSL VGSAPGTTLT VSGPYIGNNG VLRLGTALGA DGSASDRLVL DGPTAAASGS TTVQVTNLSG LGALTSGNGI EVISARNGAT TTAQTTKNAF SLAGGHVDAG AYEYRLHAAD AGGAGENWYL RSTTNVAPPA DPVAPPAAPP VVVPTYRAEA SLYAALPSQL RQGSLAMLGD LRKRVGDDDV KGTAAAPAGS QRRAWARVLS TDIDIRQGGT VSPTSKGRLT GVQAGTDLLA APNWRAGLYV GQLDGDARVN GFASGLQNLR VGRNDLRSQY VGIYGTYSGD SGLYADAVVQ SGRHRYTVQP NLGGGVEGKG HSLLGSIEVG QAFALGASGW SVEPQLQLIH QHLDLNNSAI VGAVVQSEAD SGWIARAGIR VKGELATGLG TLQPYGRFNV YKSSSGADVA SFVNGATRTD IAAPTGGTST ELAGGFTLAL GNTTSLYGEV GKLWSSGGGD AKVKSSVNAS LGVRVKW
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