| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2826 |
|---|
| Symbol | |
|---|
| ID | 7971039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2971257 |
|---|
| End bp | 2973608 |
|---|
| Gene Length | 2352 bp |
|---|
| Protein Length | 783 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644793411 |
|---|
| Product | putative phosphoketolase |
|---|
| Protein accession | YP_002944712 |
|---|
| Protein GI | 239815802 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0035882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGC ACGACGACTT CGCGCTGCTG GACGCCTGGT GGCGCGCGGC CAACTACCTG
TCCGTGGGCC AGATCTACCT GATGGACAAC CCGCTGCTGC GCGAGAAGCT GAGCCTTTCG
CACATCAAGC CGCGGCTCTT GGGCCACTGG GGCACGACGC CGGGCCTCAA TTTCGTCTAT
GCGCACATGA ACCGCGCCAT CGCGGCGCGC GAGCTCGACG CCATCTTCGT CGCCGGCCCC
GGCCACGGCG GCCCGGGCGT GGTCGCCAAC ACCTATCTCG AGGGCACCTA CAGCGAGGTC
TACCCCGCCA TCGGCCAGGA TGCCGACGGC ATGAAGCGGC TCTTCACGCA GTTCTCGTTC
CCGGGCGGCA TTCCGAGCCA CGTGGCGCCC GAAACGCCGG GCTCGATCCA CGAAGGCGGC
GAGCTCGGCT ATTCGCTGCT GCATGCCTAC GGCGCGGTGT TCGACAACCC CGGCCTGCTC
GCCTGCTGCG TGATCGGCGA TGGCGAGGCC GAGACCGGTG CGCTCGCGGC AAGCTGGCAT
TCCAACAAGT TCCTGAACCC CGAGAGCGAC GGCGCCGTGC TGCCGATCCT GCACCTGAAC
GGCTACAAGA TCGCCGGCCC CACGGTGCTC GCGCGCATTC CGGACGAAGA GCTGGCGCAA
CTGCTGCGGG GCTACGGGCA CGAGCCCTAC TTCGTTGCCG GCCACGAGCC TGCGCAGATG
CACCGGCTGA TGGCGGCCGC GCTCGACAAG GCGCTCGACG GCATCGACGC CATCCAGGCC
AATGCCCGGA AGAACGGCTT CCGCGAGCGG CCGCGCTGGC CGATGATCGT GCTGCGTTCG
CCCAAGGGCT GGACCGGGCC GCGGCAGGTG GACGGCGTGC CGGTCGAGGG CACCTTCCGC
GCGCACCAGG TGCCGCTCAC CGGCTTTGCC GCCAAGCCGG CGCATGTGGG CCTGCTCGAA
GACTGGATGC GCAGCTACCG GCCTGAGGAA TTGTTCGACG AAGGCGGCGC GTTGCGCCCC
GAGATCGCGG CGCTGGCGCC CAAGGGAGCG AGGCGCATGA GCGCCAATCC GCACACCAAC
GGCGGCCTGC TGCTCCGGGA CCTGGCCATG CCGCCCTTCC GCGAGCATGC GGTGGCGGTG
GCCACGCCCG GCGCCGCGGA TGCGGAGGCC ACGCGCGTGG CGGGCCAGTT CCTGCGCGAG
GTGATGCGCC GCAACGAGGC GGCGCGCAAC TTCCGCGTCA TGGGGCCGGA CGAAACCACG
TCGAACCGGC TGGGCGCGCT GTTCGAGGTC ACGGCGCGGA CTTCCACCGC CGAGATCCTC
CCCGGCGACG ACCATGTGTC GCCCGAAGGC CGCGTGATGG AGGTGCTGAG CGAGCACCTG
TGCCAGGGCT GGCTCGAAGG CTACCTGCTC ACCGGGCGCC ATGGCTTCTT CTCGTGCTAC
GAGGCCTTCA TCCACATCGT CGACTCGATG TTCAACCAGC ATGCCAAGTG GCTCAAGGTG
ACGCGCGGCA TCGGCTGGCG CCGTCCGATC GCCTCGCTCA ACTACCTGCT CACCAGCCAT
GTCTGGCGGC AGGACCACAA CGGCTTCAGC CACCAGGACC CGGGCTTTCT CGACCACGTG
GTGAACAAGA AGGCCGAGGT GGTGCGCGTG TACCTGCCGC CCGATGCCAA CACGCTGCTG
TCGGTGGCCG ACCATTGCCT GAAGAGCCGC AATTACGTGA ACGTGATCGT CGCGGGCAAG
CAGCCGGGGC CGCAGTGGCT GGACATCGAA TCGGCGGTGC GCCACTGCAC CGTGGGCCTG
GGCATCTGGA CCTGGGCCAG CAACGACCAG GATGCCGCCC CCGACGTGGT GATGGCCTGC
GCCGGCGACG TGCCCACGCT CGAGACGCTG GCGGCCGTCG ACCTGCTGCG CAGGATGCTG
CCGGAACTGA AGGTGCGCGT GGTGAACGTG GTCGACCTGA TGGCGCTGCA GTCGCCCGAT
GCGCATCCGC ACGGCCTGCC GCATGCGGAG TTCGACGCCA TCTTCACCAC CGACCGCCCG
GTGGTCTTCG CGTTCCACGG CTATCCCTCG CTGGTCCACC GGCTCACCTA CAAGCGCACC
AACCACGACA ACTTCCATGT GCACGGCTAC TGCGAGGAAG GCACCACCAC CACGCCGTTC
GACATGACCG TGCTCAACCG GCTCGACCGC TTCCACCTGG CGGCCGACGC CATTGCGCGC
GTGGAGCGCT TTCGCGACAG CGCGGGCCAT GTACAGCAGC ATCTGCGCGA CAAGTTGCTG
GAGCACCGCG CCTACGTCAC CGTGCACGGC AAGGACATGC CGGAGATCGA GGACTGGCGC
TGGGCGGGCT GA
|
|---|
| Protein sequence | MTEHDDFALL DAWWRAANYL SVGQIYLMDN PLLREKLSLS HIKPRLLGHW GTTPGLNFVY
AHMNRAIAAR ELDAIFVAGP GHGGPGVVAN TYLEGTYSEV YPAIGQDADG MKRLFTQFSF
PGGIPSHVAP ETPGSIHEGG ELGYSLLHAY GAVFDNPGLL ACCVIGDGEA ETGALAASWH
SNKFLNPESD GAVLPILHLN GYKIAGPTVL ARIPDEELAQ LLRGYGHEPY FVAGHEPAQM
HRLMAAALDK ALDGIDAIQA NARKNGFRER PRWPMIVLRS PKGWTGPRQV DGVPVEGTFR
AHQVPLTGFA AKPAHVGLLE DWMRSYRPEE LFDEGGALRP EIAALAPKGA RRMSANPHTN
GGLLLRDLAM PPFREHAVAV ATPGAADAEA TRVAGQFLRE VMRRNEAARN FRVMGPDETT
SNRLGALFEV TARTSTAEIL PGDDHVSPEG RVMEVLSEHL CQGWLEGYLL TGRHGFFSCY
EAFIHIVDSM FNQHAKWLKV TRGIGWRRPI ASLNYLLTSH VWRQDHNGFS HQDPGFLDHV
VNKKAEVVRV YLPPDANTLL SVADHCLKSR NYVNVIVAGK QPGPQWLDIE SAVRHCTVGL
GIWTWASNDQ DAAPDVVMAC AGDVPTLETL AAVDLLRRML PELKVRVVNV VDLMALQSPD
AHPHGLPHAE FDAIFTTDRP VVFAFHGYPS LVHRLTYKRT NHDNFHVHGY CEEGTTTTPF
DMTVLNRLDR FHLAADAIAR VERFRDSAGH VQQHLRDKLL EHRAYVTVHG KDMPEIEDWR
WAG
|
|---|
| |