| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2814 |
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| Symbol | |
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| ID | 7971027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2960090 |
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| End bp | 2961082 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793399 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002944700 |
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| Protein GI | 239815790 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00480171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCAAG ACACACCCGA AATCGCTGCC GCCATTGCCC AGCCGATGCC GCTGGAGCCC
GAACTCGACG AAGCCAGGAA GGAACTGGTC GCGCTGATCA ACCGCATCAC GCGCGGCCAG
GACGGCACCG TGGAAACGCC GGTGGCCGGC CTGCAGGTGT TCTGCATCAG CAAGCCCGAC
GGCCCCAAGC ATGCCTTCGC AACGCCGGCG CTCGGGCTCA TCGCACAAGG CTCCAAGCGG
ATCATCGTGG GCGACGACAT CTATGTGTAC GACCCGATGC ACTACCTGGT GACCTCGGTC
GACCTGCCGG TGTGCGGCCA GGTGCGCCTG ACGAGCGACA ACGAGCCGTA CCTGGGCGTG
CGGCTGGAGC TGGCAATCGA CGAGATCGGC AAGCTCATCG GCGACGAGAA GCTGCCCGCG
AAGGCCAATG CGCCTGCTTC CCGCGGCATG TACGTCAACC GCATCGGCAT GCCGGTGCTG
GAGCCGGTGC TGCGGCTGCT GCGGCTGGTC GAGTCGCCCG AGGACGTGCC GATCATGGCG
CCGCTCATCA AGCGCGAGAT CATGTACCGC CTGCTGGTGA ACGGGGAGGG CGCGCGGCTG
CGGCAGATCG CGCTGCAGGA CAGCCACACC CAGCGCATTG CCAAGGCGAT CAGCGCGCTG
CGCATCAACT ATTCGCAGTC GCTGCGGATC GAGGACATGG CGCGCGCGGT GCACATGAGC
GTGTCGTCGT TCCACCATCA CTTCAAGGCC GTGACGGCCA TGAGCCCGCT GCAGTACCAG
AAGCAGCTGC GGCTGCAGGA AGCGCGCCGC CAGATGCTGA TGGCCGGCGC CGACGTGTCG
AGTGCGGCGC ACAGCGTGGG CTACGAGAGC CCGTCGCAGT TCGCGCGCGA GTACAGCCGC
ATGTTCGGCG CGCCGCCGCT GCGCGACAAG CGCCGCTGGC TCAGCGACGC CGAGAACGAC
GCGCTCGGTG CGGGCTCGAT GCAGGCCGCC TGA
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| Protein sequence | MPQDTPEIAA AIAQPMPLEP ELDEARKELV ALINRITRGQ DGTVETPVAG LQVFCISKPD
GPKHAFATPA LGLIAQGSKR IIVGDDIYVY DPMHYLVTSV DLPVCGQVRL TSDNEPYLGV
RLELAIDEIG KLIGDEKLPA KANAPASRGM YVNRIGMPVL EPVLRLLRLV ESPEDVPIMA
PLIKREIMYR LLVNGEGARL RQIALQDSHT QRIAKAISAL RINYSQSLRI EDMARAVHMS
VSSFHHHFKA VTAMSPLQYQ KQLRLQEARR QMLMAGADVS SAAHSVGYES PSQFAREYSR
MFGAPPLRDK RRWLSDAEND ALGAGSMQAA
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