Gene Vapar_2794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2794 
Symbol 
ID7971007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp2939497 
End bp2940141 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content68% 
IMG OID644793380 
ProductFMN-binding negative transcriptional regulator 
Protein accessionYP_002944681 
Protein GI239815771 
COG category[K] Transcription 
COG ID[COG2808] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.459598 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACATGC CGCCGCAATT CAACGCCAAG GACCCGGCCA TCGCGCTGGA GCTGATGCGT 
GCACATCCCT TCGCCAGCCT GATCTCGAGC GACGACGAGG GCCTGCCTTA CGTCACGCAC 
CTGCCGCTGG TGGCCGAGCA GCAGGAGGGC GGCCAGCTGG TGCTGCTGGG CCACTGCGCC 
AAGCCCAATC CGCACTGGCG CCATCTGCAG GCGCGGCCGC AGGCGGTGGC CACCTTTCTC 
GGTCCGCATG CCTACCTGTC GCCCTCGGTC TATCCGGACC TCGCGCGCGT GCCGACCTGG 
AACTACCTGG TGGTGCACTG CACGGTCGAG GCCCGGCTGA TCGAGGAGCC CGTGGCCAAG 
GACGCGCTGC TCAAGAAGCT CATCGGCGAG CACGAGCCCG GCTATGCGCA GCAATGGCGC 
GACCTGGGCG AGGAGTTCCA GCTCAAGATG CTGGCCGGCA TCGTCGGGTT CGAGCTGCGC 
GTGAGCGCAC TGCAATGCAA GGTCAAGCTG AACCAGCACC GGCGCGAATC GCACGCTGCG 
ATGCATGCCG TCTACAGCGC CGGCACGCCC GACGAGAAGG CGCTGGCCGT GTGGATGGAA 
CGCCTGGGCA TGACGGCCGA GGCACCGGTG GCGGAAGGAA GCTGA
 
Protein sequence
MYMPPQFNAK DPAIALELMR AHPFASLISS DDEGLPYVTH LPLVAEQQEG GQLVLLGHCA 
KPNPHWRHLQ ARPQAVATFL GPHAYLSPSV YPDLARVPTW NYLVVHCTVE ARLIEEPVAK 
DALLKKLIGE HEPGYAQQWR DLGEEFQLKM LAGIVGFELR VSALQCKVKL NQHRRESHAA 
MHAVYSAGTP DEKALAVWME RLGMTAEAPV AEGS