Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2755 |
Symbol | |
ID | 7970968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2905820 |
End bp | 2906335 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644793342 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_002944643 |
Protein GI | 239815733 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGCCC GCCTGCTGGC CGACCAGATC CCGAGCCTGC GCCGCTATGC GCGCGCGCTC ACGGGCAACG TCTGGGCGGC CGACGACCTG GTGCAGGACA CGCTCGAGCG GGCCTGCAGC AAGTGGCGGC TCTGGGTGGT GGGCAGCGAC CTGCGCGCCT GGTTGTTCAC GGTCATGCAC AACATCTTTG CGAGCCAGCT GCGGCGCACG CCGCCGCCGC ACAGCGTGGT GCCGCTGGAG GACGCGGTGC AGGAGCTGCA CGGCGCCGCC GATCCGGGCC GCGACCCCGG CATGGGCCTG GACCTGCAGC GCTGCCTGAT GCAGCTGCCC GAAGAGCAGC GCGCCGTGCT GCTGCTCGTC ACGCTCGAAG ACCTTTCCTA TGCCGAGGTG GCCAAGGTGC TCGGCATCCC CGCCGGCACC GTGATGTCGC GCCTGTCGCG CGCCCGCGTC CGGCTGCAGG AGCTGATGGA CGGCGCCGCT GCGCCGCATC GCCCCGGACT GCGCCGCCTC AAGTGA
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Protein sequence | MDARLLADQI PSLRRYARAL TGNVWAADDL VQDTLERACS KWRLWVVGSD LRAWLFTVMH NIFASQLRRT PPPHSVVPLE DAVQELHGAA DPGRDPGMGL DLQRCLMQLP EEQRAVLLLV TLEDLSYAEV AKVLGIPAGT VMSRLSRARV RLQELMDGAA APHRPGLRRL K
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