Gene Vapar_2751 details

Gene Information

• Locus tag: Vapar_2751
• ID: 7972678
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2901659
• End bp: 2903494
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644793338
• Product: GTP-binding protein TypA
• Protein accession: YP_002944639
• Protein GI: 239815729
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTACCA AGCAAATCCG CAATATCGCC ATCATTGCCC ACGTCGACCA TGGCAAGACC 
ACGATGGTCG ACCAGCTGCT GCGGCAGTCG GGCACCTTTG CCGAGCACGA GAAAGTGGTC 
GACACGGTGA TGGACAACAA CGCCATCGAA AAGGAACGTG GCATCACGAT CCTGGCCAAG 
AACTGCGCCG TGACCTGGGA AGGCACGCAC ATCAACATCG TCGACACCCC CGGCCACGCG 
GACTTCGGCG GCGAAGTGGA GCGCGCGCTG TCGATGGTCG ATGGCGTGGT GCTGCTGATC 
GACGCACAGG AAGGCCCGAT GCCGCAGACG CGCTTCGTGA CCAAGAAGGC GCTGGCCCTG 
GGCCTGAAGC CGATCCTGGT CGTGAACAAG GTCGACAAGC CGGGCGCCAA CCCCGACAAG 
GTGGTGAACG CCGCCTTCGA CCTGTTCGAC AAGCTCGGCG CCACCGACGA ACAGCTCGAC 
TTCCCTGTGG TGTACGCCTC GGGCATCAAC GGCTGGTCGT CGCTCGAAGA GGGTGCGCCC 
GGCGAGCAGT GGGGCCCCGA CATGTCGGCG CTGTTCAACA CCATCCTGAA GCATGTGCCG 
GCGCAGAAGG GCGATCCGGA CGCACCGCTG CAGCTGCAGA TCTCGGCGCT CGACTTCTCG 
ACCTTCGTCG GCCGCATCGG CGTGGGCCGC ATCAGCCAGG GCACGCTCAA GCCCATGATG 
GACGTGCTGG TGATGGAAGG TCCGGACGGC AAGACCGTCA AGGGCCGCGT CAACCAGGTG 
CTGACCTTCC AGGGCCTGGA CCGCGTGCAG GCCACCGAAG CCGGCCCGGG CGAGATCGTG 
CTGATCAACG GCATTGCCGA CATCGGCATC GGCGTGACCG TGACCGATCC GGCCAACCCG 
TCGCCGCTGC CCATGCTCAA GGTCGACGAA CCGACCCTGA CCATGAACTT CTGCGTCAAC 
ACCAGCCCGC TGGCCGGCCG CGAAGGCAAG TTCGTCACCA GCCGCCAGAT CTGGGACCGC 
CTGCAGAAGG AACTGCAGCA CAACGTGGCG CTGCGCGTGA ACGAAACCGA CGAGGAAGGC 
ATCTTCGAGG TGATGGGCCG CGGCGAACTG CACCTGACCA TCCTGTTGGA AAACATGCGC 
CGCGAAGGCT ATGAAATGGC CGTGTCCAAG CCGCGCGTGG TGTTCCGCAC CGTCAACGGC 
GAGAAGCACG AGCCGATCGA GCTGGTGACC GCCGACATCG AAGAGCAGCA CCAGGGCGGC 
GTGATGCAGG CCCTGGGCGA GCGCAAGGGC GAGCTGGTCA ACATGGAACC GGACGGCCGC 
GGCCGCGTGC GCCTGGAGTA CCGCATTCCG GCGCGTGGCC TGATCGGCTT CACCAACGAA 
TTCCTGAACC TGACGCGCGG CTCGGGCCTC ATCAGCAACA TCTTCGACAG CTACGAGCCG 
CACAAGGGCG AGATCGGCAG CCGCAAGAAC GGCGTGCTGA TTTCCATGGA CGACGGTGAA 
ATCTTCACCT ACGCCCTGGG CAAGCTGGAC GACCGCGGCC GCATGTTCGT GAAGGCGAAC 
GATCCGGTGT ACGAAGGCAT GATCGTGGGC ATCCACAGCC GCGACAACGA CCTGGTGGTG 
AACGCCACGC GCACCAAGCA GCTGACCAAC TTCCGTGTCT CGGGCAAGGA AGACGCGATC 
AAGATCACGC CGCCGATCGA ACTCACGCTG GAATACGGCG TGGAATTCAT CGAGGACGAC 
GAGCTGGTCG AGATCACGCC CAAGAGCGTG CGCCTGCGCA AGCGTTTCCT CAAGGAAAAC 
GAGCGCAAGC GCGCCAGCCG CGAAATGGCG AGCTGA 

 

Protein sequence

MSTKQIRNIA IIAHVDHGKT TMVDQLLRQS GTFAEHEKVV DTVMDNNAIE KERGITILAK 
NCAVTWEGTH INIVDTPGHA DFGGEVERAL SMVDGVVLLI DAQEGPMPQT RFVTKKALAL 
GLKPILVVNK VDKPGANPDK VVNAAFDLFD KLGATDEQLD FPVVYASGIN GWSSLEEGAP 
GEQWGPDMSA LFNTILKHVP AQKGDPDAPL QLQISALDFS TFVGRIGVGR ISQGTLKPMM 
DVLVMEGPDG KTVKGRVNQV LTFQGLDRVQ ATEAGPGEIV LINGIADIGI GVTVTDPANP 
SPLPMLKVDE PTLTMNFCVN TSPLAGREGK FVTSRQIWDR LQKELQHNVA LRVNETDEEG 
IFEVMGRGEL HLTILLENMR REGYEMAVSK PRVVFRTVNG EKHEPIELVT ADIEEQHQGG 
VMQALGERKG ELVNMEPDGR GRVRLEYRIP ARGLIGFTNE FLNLTRGSGL ISNIFDSYEP 
HKGEIGSRKN GVLISMDDGE IFTYALGKLD DRGRMFVKAN DPVYEGMIVG IHSRDNDLVV 
NATRTKQLTN FRVSGKEDAI KITPPIELTL EYGVEFIEDD ELVEITPKSV RLRKRFLKEN 
ERKRASREMA S