Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2750 |
Symbol | truB |
ID | 7972351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2900706 |
End bp | 2901662 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644793337 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_002944638 |
Protein GI | 239815728 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCGC CACGCACAAG GGTGCAGCGG CGCCCTGTGC ATGGGGTGTT GTTGCTCGAC AAGCCGCTGG GACTCTCCAG CAACCAGGCC TTGCAGAAGG CCAAGTGGTT GCTGCGCGCC GAAAAAGCGG GCCACACCGG CACGCTCGAT CCGCTGGCCA CCGGCGTGCT GCCGCTGTGC TTTGGCGCGG CCACCAAGTT CAGCCAGCTG CACCTCGATG CCGACAAGAC CTACGAGGCC ACGGCACGCC TTGGCATCAA GACCTCCACC GGCGACGCCG AGGGCGACGT GATTGCCGAG CGCCCGGTGC ATGTCACCGC GGAAGACCTG GCCCGCGTCG AAGTGCAGTT CACCGGCCCG ATCCGGCAGG TTCCGCCGAT GCACAGCGCG CTCAAGAAGG ACGGCAAGGC GCTGTACGAG TACGCGCGCG AAGGCATCGA GATCGAGCGC GCGCCGCGCG ACGTCATCAT TCACAAGCTC GCGCTGACGC AGCTGGACGG CTCCCGCATC CGCATCGTTG CGTGCGTGAG CAAGGGCACC TACATTCGCA CGCTGGGCGA GGACATCGGC GAGGCACTGG GCTGCGGCGC GCACCTCACG TCGCTGCGCC GCACGGCCAC GGGCGGTTTC GGCGAGGCGG AGTGCGTCAC GATCGAGGCG CTCGAAGCCA TGGCCGAAGA CGAGCGCCTG GCACGCCTGT TGCCTGCCGA AGCACTGGTC GAGGGCCACA GCCGCGTCAC GCTCGCCGCC GAAGATGCGG CACGTTTTCT TTCAGGCCTG CGCCGCCGTG GCGGCTGGGC CGATGCCGAA GCGGTGGCCG TGTTCGGCAC CGACCCGCAG GCGTTCCTGG GCACCGCCCA TGTGAGCGCC GGCGAACTGA TCCCGGGGCG CTTGCTGAAC CCCATCGAAA TCCAGCAAAT TCTTTTGAAC GCACAACAGA CCGAAGCGAC ACCATGA
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Protein sequence | MNAPRTRVQR RPVHGVLLLD KPLGLSSNQA LQKAKWLLRA EKAGHTGTLD PLATGVLPLC FGAATKFSQL HLDADKTYEA TARLGIKTST GDAEGDVIAE RPVHVTAEDL ARVEVQFTGP IRQVPPMHSA LKKDGKALYE YAREGIEIER APRDVIIHKL ALTQLDGSRI RIVACVSKGT YIRTLGEDIG EALGCGAHLT SLRRTATGGF GEAECVTIEA LEAMAEDERL ARLLPAEALV EGHSRVTLAA EDAARFLSGL RRRGGWADAE AVAVFGTDPQ AFLGTAHVSA GELIPGRLLN PIEIQQILLN AQQTEATP
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