| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2750 |
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| Symbol | truB |
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| ID | 7972351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2900706 |
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| End bp | 2901662 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793337 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_002944638 |
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| Protein GI | 239815728 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCGC CACGCACAAG GGTGCAGCGG CGCCCTGTGC ATGGGGTGTT GTTGCTCGAC
AAGCCGCTGG GACTCTCCAG CAACCAGGCC TTGCAGAAGG CCAAGTGGTT GCTGCGCGCC
GAAAAAGCGG GCCACACCGG CACGCTCGAT CCGCTGGCCA CCGGCGTGCT GCCGCTGTGC
TTTGGCGCGG CCACCAAGTT CAGCCAGCTG CACCTCGATG CCGACAAGAC CTACGAGGCC
ACGGCACGCC TTGGCATCAA GACCTCCACC GGCGACGCCG AGGGCGACGT GATTGCCGAG
CGCCCGGTGC ATGTCACCGC GGAAGACCTG GCCCGCGTCG AAGTGCAGTT CACCGGCCCG
ATCCGGCAGG TTCCGCCGAT GCACAGCGCG CTCAAGAAGG ACGGCAAGGC GCTGTACGAG
TACGCGCGCG AAGGCATCGA GATCGAGCGC GCGCCGCGCG ACGTCATCAT TCACAAGCTC
GCGCTGACGC AGCTGGACGG CTCCCGCATC CGCATCGTTG CGTGCGTGAG CAAGGGCACC
TACATTCGCA CGCTGGGCGA GGACATCGGC GAGGCACTGG GCTGCGGCGC GCACCTCACG
TCGCTGCGCC GCACGGCCAC GGGCGGTTTC GGCGAGGCGG AGTGCGTCAC GATCGAGGCG
CTCGAAGCCA TGGCCGAAGA CGAGCGCCTG GCACGCCTGT TGCCTGCCGA AGCACTGGTC
GAGGGCCACA GCCGCGTCAC GCTCGCCGCC GAAGATGCGG CACGTTTTCT TTCAGGCCTG
CGCCGCCGTG GCGGCTGGGC CGATGCCGAA GCGGTGGCCG TGTTCGGCAC CGACCCGCAG
GCGTTCCTGG GCACCGCCCA TGTGAGCGCC GGCGAACTGA TCCCGGGGCG CTTGCTGAAC
CCCATCGAAA TCCAGCAAAT TCTTTTGAAC GCACAACAGA CCGAAGCGAC ACCATGA
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| Protein sequence | MNAPRTRVQR RPVHGVLLLD KPLGLSSNQA LQKAKWLLRA EKAGHTGTLD PLATGVLPLC
FGAATKFSQL HLDADKTYEA TARLGIKTST GDAEGDVIAE RPVHVTAEDL ARVEVQFTGP
IRQVPPMHSA LKKDGKALYE YAREGIEIER APRDVIIHKL ALTQLDGSRI RIVACVSKGT
YIRTLGEDIG EALGCGAHLT SLRRTATGGF GEAECVTIEA LEAMAEDERL ARLLPAEALV
EGHSRVTLAA EDAARFLSGL RRRGGWADAE AVAVFGTDPQ AFLGTAHVSA GELIPGRLLN
PIEIQQILLN AQQTEATP
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