| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2726 |
|---|
| Symbol | |
|---|
| ID | 7972326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2874133 |
|---|
| End bp | 2875074 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644793312 |
|---|
| Product | transcriptional regulator CysB-like protein |
|---|
| Protein accession | YP_002944614 |
|---|
| Protein GI | 239815704 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.634553 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGC ACCAGTTCAA GTTTGTTCAG GAAGCCGTGC GGCGCAACCT GAACCTGACG
GAGGCGGCGA AGGCGCTGCA CACCTCGCAG CCGGGCGTGT CCAAGGCGAT CATCGAGCTC
GAGGAAGAGC TCGGCGTCGA GATCTTCGCG CGCCATGGCA AGCGCCTGAA GCGGGTCACC
GAGCCGGGCC AGCACGTGAT CGCGAGCATC GAATTGATCA TGCGCGAAGT CGGCAACCTC
AAGCGCATCG GCGAGCAGTT CAGCGCGCAG GACAGCGGCA CGCTCTCGAT CGCCACCACC
CACACCCAGG CGCGCTACGT GCTGCCGGTG CCGGTGGCCA AGCTGCGCGA GGCCTACCCC
AAGGTCAACG TGAGCCTGCA CCAGGGCTCG CCCGACCAGG TGGCGCGCAT GGTGATCGAC
GAGATCGCCG AAGTGGGCAT TGCCACCGAG TCGCTCTCGG ACTACACCGA GCTCGTGACC
CTGCCCTGCT ACGAATGGCA GCACGTGCTG GTGCTGCCCA AGGACCATCC GCTGGCGGCC
AAGGAGCGCA TCTCGCTCGA AGACCTGGCG CACGAGCCCA TCATCACCTA CCACCCGTCG
TTCACCGGCC GCACGCGCAT CGACCATGCC TTTGCGCAGA AGAAGCTCAC GCCGCGCATC
GCGCTCGAAG CGATCGACTC CGACGTGATC AAGACCTACG TGCGCCTGGG CCTTGGCGTG
GGCATCGTGG CCGAGATGGC GGTGCGCGAC GAATCGAACG CCGATCTCGT GGTGCGCCCC
ATGGGCCATG TGTTCGGCCA GAACATCGCG CGCGTGGCCT TCAAGCGCAG CGCCTACCTG
CGCAACTTCG TCTTCAAGTT TGCCGAGCTG CTGTCCGACC GTCTCGACCG CAATCTGATT
GCCAAGGCCC TGAGCGGCCA CCAGCAAGAC TACGAACTTT GA
|
|---|
| Protein sequence | MNLHQFKFVQ EAVRRNLNLT EAAKALHTSQ PGVSKAIIEL EEELGVEIFA RHGKRLKRVT
EPGQHVIASI ELIMREVGNL KRIGEQFSAQ DSGTLSIATT HTQARYVLPV PVAKLREAYP
KVNVSLHQGS PDQVARMVID EIAEVGIATE SLSDYTELVT LPCYEWQHVL VLPKDHPLAA
KERISLEDLA HEPIITYHPS FTGRTRIDHA FAQKKLTPRI ALEAIDSDVI KTYVRLGLGV
GIVAEMAVRD ESNADLVVRP MGHVFGQNIA RVAFKRSAYL RNFVFKFAEL LSDRLDRNLI
AKALSGHQQD YEL
|
|---|
| |