| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2720 |
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| Symbol | |
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| ID | 7972320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2865240 |
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| End bp | 2866451 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793306 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | YP_002944608 |
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| Protein GI | 239815698 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0250139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCCCC TGCTTTCCCG GTTGCAACCC TATCCCTTCG AGCGGCTGAA GCAACTGTTC
GCGGGCGTCA CGCCCAACCC CGAGTTCCCG GCCATCAGCC TGGGCATCGG CGAACCCAAG
CACGCCACGC CAGGCTTCAT CAAGGACGCT TTGAGCGCCA GCCTCGGCGC GCTGGCCGCC
TACCCCGCGA CGGCGGGCGA CCTGACCCTG CGCACCGCCT TCACCGACTG GCTGAAAACC
CGCTACAGCC TCGCCCTCGA CCCGGCCACG CAGGTGCTGC CTGTCAATGG TTCGCGGGAA
GCCCTGTTCT CGCTGGCGCA GACCGTGGTC GACCCCACCG CCTCGCCGCA GCCGGTGGTG
ATGTCGCCCA ATCCGTTCTA TCAGATCTAC GAGGGCGCGG CCCTGCTCTC GGGCGCCGAG
CCGTACTACG TGGCCAGTGT GCCCGCGCGC AATTTCGCCG TGGCCTGGGA CAGCGTGCCC
GAGGCCGTCT GGGCCCGCAC GCAGTTGGTG TTCGTCTGCT CACCGGGCAA CCCGACGGGT
GCGGTGATGT CGCTGGACGA ATGGAAAAGG CTCTTCGACC TGTCGGACCG CCACGGCTTC
GTGATTGCCG CCGACGAGTG CTACAGCGAG ATCTATTTCC GTGACGAGCC CCCGCTCAGC
GGACTCGAGG CCTCGGTGAC GCTCGGGCGG CCCGATTTCC GGAACCTGAT TGCGCTGACC
TCGCTGTCCA AGCGCAGCAA CGTGCCCGGC CTGCGCAGCG GCTTCGTGGC GGGCGACGCG
GCCATCATCA AGAAGTTCCT GCTCTACCGC ACCTACCACG GCAGCGCCAT GAGCGGCGCC
GTGGCCGCGG CCAGCATCGC GGCCTGGGGC GACGAGTCCC ATGTGGTGGA CAACCGCGCC
CAGTACCGCG CCAAGTTCGC GGCCGTCACA CCGCTGCTCG AACCCGTGCT CGACGTGCGC
CTGCCCGACG CCAGTTTCTA TCTCTGGGCC GGCATTCCCC AAGTGTGGGC TGGCGACGAC
GAAGCCTTCG CCCGCGCGCT CTACGCTCAA TACAATGTGA CGGTTCTGCC GGGGAGCTAT
CTGGCGCGAG AGACCGCCCA CGGCGCCAAC CCTGGCCGCG GCCGCATCCG CATGGCACTG
GTCGCCGAAA CAACCGAATG CGTGGAGGCC GCCCAGCGCA TCGTCCGCTT CTGCAGGGAC
GCCCGCCGCT GA
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| Protein sequence | MNPLLSRLQP YPFERLKQLF AGVTPNPEFP AISLGIGEPK HATPGFIKDA LSASLGALAA
YPATAGDLTL RTAFTDWLKT RYSLALDPAT QVLPVNGSRE ALFSLAQTVV DPTASPQPVV
MSPNPFYQIY EGAALLSGAE PYYVASVPAR NFAVAWDSVP EAVWARTQLV FVCSPGNPTG
AVMSLDEWKR LFDLSDRHGF VIAADECYSE IYFRDEPPLS GLEASVTLGR PDFRNLIALT
SLSKRSNVPG LRSGFVAGDA AIIKKFLLYR TYHGSAMSGA VAAASIAAWG DESHVVDNRA
QYRAKFAAVT PLLEPVLDVR LPDASFYLWA GIPQVWAGDD EAFARALYAQ YNVTVLPGSY
LARETAHGAN PGRGRIRMAL VAETTECVEA AQRIVRFCRD ARR
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