| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2719 |
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| Symbol | |
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| ID | 7972319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2864362 |
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| End bp | 2865195 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793305 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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| Protein accession | YP_002944607 |
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| Protein GI | 239815697 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0740791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGC AACTGCAACA AATCATCGAC GCCGCGTGGG AAGACCGCGC CAACATCTCG
TCCAGCGCCG CCCCTGCCGA AGTGCGCGAT GCCGTCGAGC ACGTGATTTC CGAGCTCAAC
AACGGCAAGC TGCGCGTTGC CACGCGCGAA AGCGTGGGCC AGTGGACCGT GCACCAGTGG
ATCAAGAAGG CCGTGCTGCT GTCGTTCCGC CTGAAGGACA ACGAGCAGAT GCAGGCCGGC
TCGCTGGGCT TCTACGACAA GGTGCCCACC AAGTTCTCGC ACCTGTCGGC AAACGAGCTG
AAGGAATCGG GCGTTCGCAT CGTGCCGCCG GCCGTGGCCC GCCGCGGCAG CTACATCGCC
AAGGGCGCGA TCCTGATGCC TTCCTACGTG AACATCGGCG CCTACGTGGG CGAAGGCACC
ATGGTCGACA CCTGGGCCAC CGTGGGTTCC TGCGCGCAGA TCGGTGCCAA CGTGCACCTG
TCGGGCGGCG TCGGCATCGG CGGCGTGCTC GAGCCGCTGC AGGCCGGCCC GACCATCATC
GAGGACAACT GCTTCATCGG TGCGCGCTCC GAAGTGGTCG AGGGCGTGGT GATCGAGGAA
AACTCGGTGC TCGGCATGGG TGTGTACATC GGCCAGAGCA CGCCCATCTT CAACCGCGAC
ACCGGAGAGA CGTCCTTCGG CCGCGTGCCG TCCGGCAGCG TCGTGATCAG CGGCAACCTG
CCCAAGAAGA CCAAGTCGGG CCAGGAATAC AGCACCTACG CGGCGATCAT CGTCAAGACG
GTCGATGCGC AAACGCGTTC CAAGACCAGC CTGAACGACC TGCTGCGCGA CTGA
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| Protein sequence | MTQQLQQIID AAWEDRANIS SSAAPAEVRD AVEHVISELN NGKLRVATRE SVGQWTVHQW
IKKAVLLSFR LKDNEQMQAG SLGFYDKVPT KFSHLSANEL KESGVRIVPP AVARRGSYIA
KGAILMPSYV NIGAYVGEGT MVDTWATVGS CAQIGANVHL SGGVGIGGVL EPLQAGPTII
EDNCFIGARS EVVEGVVIEE NSVLGMGVYI GQSTPIFNRD TGETSFGRVP SGSVVISGNL
PKKTKSGQEY STYAAIIVKT VDAQTRSKTS LNDLLRD
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