Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2692 |
Symbol | tolB |
ID | 7972291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2835571 |
End bp | 2836797 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644793280 |
Product | translocation protein TolB |
Protein accession | YP_002944583 |
Protein GI | 239815673 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.319845 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCCCG CGCTCGCCCA GTTCCGGGTC GAGGTGTCGG GCGTCGGACT CACGCAGCTG CCCATTGCGC TGGTTCCCTT CAAGGGGCAG GACGCCTCGC CGCAGAAGAT CTCCGAGATC GTGCAGGCCG ACCTGGAGCG CAGCGGCCAG TTCCGCGGCG TCGATGCCTC GGGCCAGGCG CTGGACGAAG CCTCGCGCCC CGACCTCGCG CTGTGGCGCC AGCGCACGGC CGATTCGCTC GTGGTGGGCA GCGTCACGCG CCTGGCCGAC GGCCGCTTCG ACGTGCGCTT CCGCCTGTGG GACGTGGTGC GCGGACAGGA CCTCGGCGGC CAGAGCTACA CCGTGCCGCA AGGCGATCTT CGGCTCGCCT CGCACCGCAT TGCCGACTAC GTCTATGAAA AGCTGACCGG CGACAAGGGC ATCTTCTCGA CCCGCATCGC CTACGTGACC AAGGGCGGCA GCCGCTATTC GCTGTGGGTG GCGGATGCCG ACGGCGAGAA CGCGCAGGCC GCGCTCGCCA GCCCCGAACC CATCATCTCG CCGGTCTGGT CGTCCAACGG GCAACAGCTG GCGTACGTGT CCTTCGAGTC GCGCAAGCCG GTGGTGTACG TGCACAACGT GGCGAGCGGG CAGCGCCGCC TCTTGGCCAA CTTCCGCGGT TCCAACAGCG CGCCGGCATG GGCGCCCGAT GGCGGCTCGC TGGCCGTCAC GCTCAGCCGC GACGGCGGCT CCCAGCTCTA CACGATCCCG GCGAGCGGCG GCGAGCCGCG CCGCCTGACC CAGAGCGCCA GCATCGACAC CGAGCCCGTC TACTCGGCCG ACGGCAGCAC GATCTACTTC GTGAGCGACC GAGGCGGTGC GCCGCAGATC TACAAGATGA GCGCCAGCGG CGGCGCGCCG ACGCGCGTCA CCTTCAGCGG CACCTACAAC ATTTCTCCTT CTGTCAGCGG CGATGGCCGG TGGTTGGCCT ACATCTCCCG CGTTGGCGGC GCCTTCAAAC TCCATGTGAT GGAGTTGGCC ACCGGCAATG TCTCGGCCAT CACCGACACC TCGGCAGACG AGAGCCCGAG TTTTGCCCCC AACAGCAAGC TGATCGTCTA CGCAACGCAC CTGCAAGGCC GCGAAGCGCT CATGACGACC ACGCTGGATG GAAAAATAAA GGCACGTCTG GCGGGACAGG GCGGAGACAT AAGAGAACCG GACTGGGGTC CGTTTCAAAA GCAATGA
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Protein sequence | MLPALAQFRV EVSGVGLTQL PIALVPFKGQ DASPQKISEI VQADLERSGQ FRGVDASGQA LDEASRPDLA LWRQRTADSL VVGSVTRLAD GRFDVRFRLW DVVRGQDLGG QSYTVPQGDL RLASHRIADY VYEKLTGDKG IFSTRIAYVT KGGSRYSLWV ADADGENAQA ALASPEPIIS PVWSSNGQQL AYVSFESRKP VVYVHNVASG QRRLLANFRG SNSAPAWAPD GGSLAVTLSR DGGSQLYTIP ASGGEPRRLT QSASIDTEPV YSADGSTIYF VSDRGGAPQI YKMSASGGAP TRVTFSGTYN ISPSVSGDGR WLAYISRVGG AFKLHVMELA TGNVSAITDT SADESPSFAP NSKLIVYATH LQGREALMTT TLDGKIKARL AGQGGDIREP DWGPFQKQ
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