Gene Vapar_2692 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2692 
SymboltolB 
ID7972291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2835571 
End bp2836797 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content68% 
IMG OID644793280 
Producttranslocation protein TolB 
Protein accessionYP_002944583 
Protein GI239815673 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.319845 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCCCG CGCTCGCCCA GTTCCGGGTC GAGGTGTCGG GCGTCGGACT CACGCAGCTG 
CCCATTGCGC TGGTTCCCTT CAAGGGGCAG GACGCCTCGC CGCAGAAGAT CTCCGAGATC
GTGCAGGCCG ACCTGGAGCG CAGCGGCCAG TTCCGCGGCG TCGATGCCTC GGGCCAGGCG
CTGGACGAAG CCTCGCGCCC CGACCTCGCG CTGTGGCGCC AGCGCACGGC CGATTCGCTC
GTGGTGGGCA GCGTCACGCG CCTGGCCGAC GGCCGCTTCG ACGTGCGCTT CCGCCTGTGG
GACGTGGTGC GCGGACAGGA CCTCGGCGGC CAGAGCTACA CCGTGCCGCA AGGCGATCTT
CGGCTCGCCT CGCACCGCAT TGCCGACTAC GTCTATGAAA AGCTGACCGG CGACAAGGGC
ATCTTCTCGA CCCGCATCGC CTACGTGACC AAGGGCGGCA GCCGCTATTC GCTGTGGGTG
GCGGATGCCG ACGGCGAGAA CGCGCAGGCC GCGCTCGCCA GCCCCGAACC CATCATCTCG
CCGGTCTGGT CGTCCAACGG GCAACAGCTG GCGTACGTGT CCTTCGAGTC GCGCAAGCCG
GTGGTGTACG TGCACAACGT GGCGAGCGGG CAGCGCCGCC TCTTGGCCAA CTTCCGCGGT
TCCAACAGCG CGCCGGCATG GGCGCCCGAT GGCGGCTCGC TGGCCGTCAC GCTCAGCCGC
GACGGCGGCT CCCAGCTCTA CACGATCCCG GCGAGCGGCG GCGAGCCGCG CCGCCTGACC
CAGAGCGCCA GCATCGACAC CGAGCCCGTC TACTCGGCCG ACGGCAGCAC GATCTACTTC
GTGAGCGACC GAGGCGGTGC GCCGCAGATC TACAAGATGA GCGCCAGCGG CGGCGCGCCG
ACGCGCGTCA CCTTCAGCGG CACCTACAAC ATTTCTCCTT CTGTCAGCGG CGATGGCCGG
TGGTTGGCCT ACATCTCCCG CGTTGGCGGC GCCTTCAAAC TCCATGTGAT GGAGTTGGCC
ACCGGCAATG TCTCGGCCAT CACCGACACC TCGGCAGACG AGAGCCCGAG TTTTGCCCCC
AACAGCAAGC TGATCGTCTA CGCAACGCAC CTGCAAGGCC GCGAAGCGCT CATGACGACC
ACGCTGGATG GAAAAATAAA GGCACGTCTG GCGGGACAGG GCGGAGACAT AAGAGAACCG
GACTGGGGTC CGTTTCAAAA GCAATGA
 
Protein sequence
MLPALAQFRV EVSGVGLTQL PIALVPFKGQ DASPQKISEI VQADLERSGQ FRGVDASGQA 
LDEASRPDLA LWRQRTADSL VVGSVTRLAD GRFDVRFRLW DVVRGQDLGG QSYTVPQGDL
RLASHRIADY VYEKLTGDKG IFSTRIAYVT KGGSRYSLWV ADADGENAQA ALASPEPIIS
PVWSSNGQQL AYVSFESRKP VVYVHNVASG QRRLLANFRG SNSAPAWAPD GGSLAVTLSR
DGGSQLYTIP ASGGEPRRLT QSASIDTEPV YSADGSTIYF VSDRGGAPQI YKMSASGGAP
TRVTFSGTYN ISPSVSGDGR WLAYISRVGG AFKLHVMELA TGNVSAITDT SADESPSFAP
NSKLIVYATH LQGREALMTT TLDGKIKARL AGQGGDIREP DWGPFQKQ