| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2690 |
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| Symbol | |
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| ID | 7972289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2832001 |
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| End bp | 2833527 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793278 |
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| Product | ribonuclease, Rne/Rng family |
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| Protein accession | YP_002944581 |
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| Protein GI | 239815671 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.251844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGACA TCCTGATCAA CTGGTCCCCG CAGGAGACCC GTGTGGCGCT GGTCGAGCAC
GGCGCGGTGC AAGAGCTGCA CGTCGAACGC ACGCTGGAGC GCGGGCTGGT CGGCAACATC
TACCTTGGCA AGGTGTCGCG CGTGCTGCCG GGCATGCAGT CGGCCTTCAT CGACGTCGGC
CTCGAGCGCA CGGCCTTCCT GCACGTGGCC GACATCGTGG CGCCGTTCAC GCCGGGCTCG
CGGCCCAGTG CACCGGCCCC CGAGCGCGAC CACCGCAACG GCGGGCCGAT GGTGCCCATC
GAGAAGCAGG TGTTCGAAGG CCAGTCGCTG CTGGTGCAGG TGATCAAGGA CCCGATCGGC
ACCAAGGGCG CGCGGCTCTC CACGCAGATC AGCATTGCCG GCCGGCTGCT GGTGTTCTTG
CCGCAGGACA ACCACATCGG CGTTTCGCAG AAGATCCCTT CGGACCAGCG CGAATCCTTG
CGCACGCGCA TGCTCGCGCT GATCGAGGCC GCAGCCGCGG CCGACAGCGG CGGCGTGGTG
CCTGCCAACA CCGGTGGCTT CATCCTGCGC ACCAACGGCG AAGATTCGTC CGACGCCGAG
CTGGCAGAAG ACATCGCCTA CCTGCGCAAG ACCTGGTCGC GCATCCGCGA GGCGTCAAGC
AAAATGCCGC CGATGTCGCT GCTGCACCAG GACCTGAGCC TGCTGCAGCG CGTGCTGCGC
GACATGACCA GCGAGGACAC GCAGACCATC CGCATCGATT CGCGCGAGCA GTTCGAGGCG
CTGCTCAAGT TCGGGCTCGA ATACATGCCG CAGGCGGCCG GCAAGCTGCA GCACTACAAG
GGCGAGCGGC CGATCTTCGA CCTGTATTCG GTCGACGAGG AAATCGCCAA GGCGCTGGGC
CGGCGCGTCG AACTCAAGTC GGGCGGCTAC CTCGTGGTCG ACCAGACCGA GGCGCTCACC
ACGGTGGACG TGAACACCGG CGGCTTCGTG GGCGCGCGCA ATTTCGACGA CACCATCTTC
AAGACCAACC TCGAGGCGGC GCAGGCCATC GCGCGCCAGC TGCGGCTACG CAACCTGGGC
GGCATCATCA TCGTCGACTT CATCGACATG GGGCGCGACG ACCATCGCGA GCAGGTGCTG
GCCGAGTTCC GCAAGCAGCT CGCGCGCGAC CGCGTCAAGA CCACGGCGGG CGGTTTCTCG
CAGCTCGGCC TGGTCGAGAT GACGCGCAAG CGCACGCGCG AATCGCTGGC CCACATGCTG
TGCGAGCCCT GCGCGGCCTG CGGCGGGCAG GGCATCGTGA AGACGGCGCG CAGCGTGGCC
TACGACGCCA TGCGCGAGAT CCTGCGCGAA GCGCGGCAGT TCACGCCGCG CGAGTTCCGC
ATCGTGTCGT CGCCGCAGGT GATCGAGCTG TTCCTCGACG AGGAAAGCCA GCATCTCGCG
GGGCTGAGCG ACTTCATCGG CAAGCCGATC TCGCTGCAGT CCGAGCCCGC GATCGGGCAG
GGCCAGTACG ACATCGTGCT GCTCTGA
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| Protein sequence | MQDILINWSP QETRVALVEH GAVQELHVER TLERGLVGNI YLGKVSRVLP GMQSAFIDVG
LERTAFLHVA DIVAPFTPGS RPSAPAPERD HRNGGPMVPI EKQVFEGQSL LVQVIKDPIG
TKGARLSTQI SIAGRLLVFL PQDNHIGVSQ KIPSDQRESL RTRMLALIEA AAAADSGGVV
PANTGGFILR TNGEDSSDAE LAEDIAYLRK TWSRIREASS KMPPMSLLHQ DLSLLQRVLR
DMTSEDTQTI RIDSREQFEA LLKFGLEYMP QAAGKLQHYK GERPIFDLYS VDEEIAKALG
RRVELKSGGY LVVDQTEALT TVDVNTGGFV GARNFDDTIF KTNLEAAQAI ARQLRLRNLG
GIIIVDFIDM GRDDHREQVL AEFRKQLARD RVKTTAGGFS QLGLVEMTRK RTRESLAHML
CEPCAACGGQ GIVKTARSVA YDAMREILRE ARQFTPREFR IVSSPQVIEL FLDEESQHLA
GLSDFIGKPI SLQSEPAIGQ GQYDIVLL
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