Gene Vapar_2624 details

Gene Information

• Locus tag: Vapar_2624
• ID: 7972386
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2768088
• End bp: 2770004
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644793212
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_002944515
• Protein GI: 239815605
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.642505
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACAATC AGTGGTTTTC CAAAGTTGCC GTATGGCTCG TCATTGCCAT GGTGTTGTTC 
ACTGTGTTCA AGCAGTTCGA CACCCGCGGC GGCGTCGGCT CAGGGACGGT GAGCTATTCG 
GAGTTCCTGG ATCAGGTCCG AAACAACCAG ATCAAGAGCG CCGTCATTCC TGAAGGTGCG 
GGCGGCGGAG AGATCGTGGC CGTCACCAAC GAGGATCGCA AGATCCGCAC GACCGCCACC 
GTGCTCGACC GCGGCCTGGT GGGCGACCTG ATCGACCACA ACGTCAAGTT CGACGTCAAG 
CCGCGCGAAG AGGGCTCGCT CCTCATGACG CTCTTGGTGA GCTGGGGGCC GATGCTGCTC 
CTGATCGGGG TCTGGATCTA CTTCATGCGG CAGATGCAGG GCGGCGGCAA GGGCGGGGCG 
TTCAGCTTCG GCAAGAGCAA GGCCCGCATG ATGGACGAGA ACAACAACAC GGTCACTTTT 
GCCGACGTCG CGGGCTGCGA CGAGGCCAAG GAGGAGGTCC GCGAGGTGGT CGACTTCCTG 
AAGGACCCGC AGCGCTTCCA GAAGCTTGGC GGCCGCATTC CGCGCGGCCT GCTGCTGGTC 
GGCCCTCCGG GCACCGGCAA GACCTTGCTG GCCAAGTCGA TTGCAGGTGA AGCCAAGGTG 
CCGTTCTTCT CGATCTCGGG TTCGGACTTC GTCGAAATGT TCGTCGGCGT GGGCGCGGCG 
CGCGTGCGCG ACATGTTCGA GAACGCCAAG AAGAACGCGC CCTGCATCAT CTTCATCGAC 
GAAATCGATG CGGTGGGCCG CCAGCGCGGT GCCGGCCTGG GTGGCGGCAA CGACGAGCGC 
GAGCAAACGC TGAACCAGAT GCTGGTGGAG ATGGACGGCT TCGAAACTAA CCTGGGCGTG 
ATCGTGGTGG CTGCCACCAA CCGCCCGGAC ATCCTGGACG CCGCGCTGCT GCGCCCGGGC 
CGCTTCGACC GCCAGGTGTA CGTGACGCTG CCCGACATCC GCGGCCGCGA GCAGATCCTG 
GGCGTTCACA TGCGCAAGGT GCCGCTCGGC CAGGACGTGA ACCCGAGCGT CATTGCGCGC 
GGCACGCCCG GCATGTCCGG CGCCGACCTG GCCAACCTCT GCAACGAAGC CGCACTGATG 
GCTGCACGCC GCAATGCGCG CGTGGTCGAG ATGCAGGACT TCGAGAAGGC CAAGGACAAG 
ATCTTCATGG GCCCCGAGCG CAAGAGCATG GTCATGCCCG AGGAAGAGCG CCGCAACACG 
GCCTACCACG AGTCCGGCCA CGCGCTCATC GGCAAGCTGC TGCCCAAGTG CGATCCGGTC 
CACAAGGTCA CCATCATCCC GCGTGGCCGG GCCCTGGGCG TGACCATGAG CCTGCCGGCG 
CAGGACCGCT ACAGCTATGA CCGCGAATAC ATGCTGAACC AGATCAGCAT GCTGTTCGGC 
GGCCGCATCG CCGAAGAAGT GTTCATGCAC CAGATGACCA CCGGCGCCAG CAACGACTTC 
GAGCGCGCGA CCTCCATCGC CCGCGACATG GTCACGCGCT ACGGCATGAC CGACGCGCTG 
GGACCGATGG TCTATGCCGA GAACGAAGGC GAAGTGTTCC TCGGCCGCTC GGTCACCAAG 
ACCACCAACA TGAGCGAGCA GACCATGGAA AAGGTCGACG CCGAAGTGCG CCGCATCATC 
GACGAGCAGT ACGCCCTGGC GCGCCGCCTG ATCGAGGAAA ACAGCGACAA GATGCACGTC 
ATGGCCAAGG CCCTGCTCGA ATGGGAAACC ATCGACACGG AACAGCTCGA CGACATCATG 
GCCGGCCGCG CACCGCGCCC GCCCAAGGAC TGGACGCCGC GCATTCCGCC TTCGGGCAGT 
GGCGGCAGCG GCGGCACGCC GGCAGTCAAT CCGGATCCGG CACCCACAGT GGCCTGA 

 

Protein sequence

MNNQWFSKVA VWLVIAMVLF TVFKQFDTRG GVGSGTVSYS EFLDQVRNNQ IKSAVIPEGA 
GGGEIVAVTN EDRKIRTTAT VLDRGLVGDL IDHNVKFDVK PREEGSLLMT LLVSWGPMLL 
LIGVWIYFMR QMQGGGKGGA FSFGKSKARM MDENNNTVTF ADVAGCDEAK EEVREVVDFL 
KDPQRFQKLG GRIPRGLLLV GPPGTGKTLL AKSIAGEAKV PFFSISGSDF VEMFVGVGAA 
RVRDMFENAK KNAPCIIFID EIDAVGRQRG AGLGGGNDER EQTLNQMLVE MDGFETNLGV 
IVVAATNRPD ILDAALLRPG RFDRQVYVTL PDIRGREQIL GVHMRKVPLG QDVNPSVIAR 
GTPGMSGADL ANLCNEAALM AARRNARVVE MQDFEKAKDK IFMGPERKSM VMPEEERRNT 
AYHESGHALI GKLLPKCDPV HKVTIIPRGR ALGVTMSLPA QDRYSYDREY MLNQISMLFG 
GRIAEEVFMH QMTTGASNDF ERATSIARDM VTRYGMTDAL GPMVYAENEG EVFLGRSVTK 
TTNMSEQTME KVDAEVRRII DEQYALARRL IEENSDKMHV MAKALLEWET IDTEQLDDIM 
AGRAPRPPKD WTPRIPPSGS GGSGGTPAVN PDPAPTVA