Gene Vapar_2609 details

Gene Information

• Locus tag: Vapar_2609
• Symbol: lpxD
• ID: 7972371
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2753969
• End bp: 2754946
• Gene Length: 978 bp
• Protein Length: 325 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644793197
• Product: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• Protein accession: YP_002944500
• Protein GI: 239815590
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
• TIGRFAM ID: [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGGACTGC AGCTCGGAGC CATCGTCAGC GCCCTTGGGG GCGAGCTTCA CGGGGACCCG 
GCGCTGTCCA TCGAACGGCT TGCGCCGCTG CAGAATGCGC AGCCCGATGC GCTCAGCTTC 
CTGAGCCATC CCAAATACCA GCAGGAACTG GCGGCCTCCA AGGCTGCCTG CGTGATCGTC 
GCGCCGGCCA TGCGCGAGGC CGCGGCCTCG CGCGGGGCGT TCATCGTCGC GGCCGATCCC 
TACCTTTATT TCGCGCGCCT CACGCAGCTG TGGAAGGCGC ATCATGCGCG GCCCGAGGCT 
GACCGCATCC ATCCCTCCGC GGTGATCCAT CCCGAGGCCG TGGTGGACGC CACGGCGCGC 
ATCGGCGCCT TGTGCGTGGT GGAGCGGGGC GCGCGCATCG GCGCCGGCAC GGTCCTCAAG 
TCGCGCGTGA CGATCAGCGA AGACTGCGTG GTCGGCGAGC GCTGCCTGCT GCATCCGGGC 
GTGGTGATCG GCGCCGACGG CTTCGGCCTG GCGCCGCACG AAGGCGCCTG GGTCAAGATC 
GAGCAGCTGG GCGCGGTGCG CATCGGCAAC GACGTCGAGA TCGGCGCCAA CACCTGCATC 
GACCGCGGCG CGCTCGACGA CACCGTCATC GAGGACGGCG TCAAGCTCGA CAACCTGATC 
CAGATCGGCC ACAACGTGCG TGTCGGCAAG CACACCGCCA TGGCCGGCTG CGTTGGCGTG 
GCGGGCAGCG CCACCATCGG TGCGCACTGC ACCTTCGGCG GCGGTGCGAT CGTGCTCGGC 
CATCTCACGG TGGCCGACGG GGTGCACGTG TCCGCGGCCA CCGTGGTGAC CCGCTCGATC 
CGCAAGGCCG GCCAGTACAC CGGCATGTTC CCCATCGACG ACAATGCGAA CTGGGAAAAG 
AACGCGGCAA CGCTCAAGCA GTTGCACAGC CTGCGCGAAC GACTCAAGGC GCTCGAAAAG 
GCCCCTCAGA AAAAGTGA 

 

Protein sequence

MGLQLGAIVS ALGGELHGDP ALSIERLAPL QNAQPDALSF LSHPKYQQEL AASKAACVIV 
APAMREAAAS RGAFIVAADP YLYFARLTQL WKAHHARPEA DRIHPSAVIH PEAVVDATAR 
IGALCVVERG ARIGAGTVLK SRVTISEDCV VGERCLLHPG VVIGADGFGL APHEGAWVKI 
EQLGAVRIGN DVEIGANTCI DRGALDDTVI EDGVKLDNLI QIGHNVRVGK HTAMAGCVGV 
AGSATIGAHC TFGGGAIVLG HLTVADGVHV SAATVVTRSI RKAGQYTGMF PIDDNANWEK 
NAATLKQLHS LRERLKALEK APQKK