| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2581 |
|---|
| Symbol | |
|---|
| ID | 7970058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2723635 |
|---|
| End bp | 2725050 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644793168 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002944473 |
|---|
| Protein GI | 239815563 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0578515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCC CCCTGGAGGG CAGCGGCCAG CGTGACCGGC GACCGGGCCT GAAGCTCGGC
TTCAGCCTTT TCTGGCGCAC ATTCTTCCTG CTCGCGCTGC TGCTGATCGG CTGTACGGTC
GCCTGGCTGC AGACCTTCCG CTCGCTCGAA TACGAGCCGC GCGCCATCCA GACGGCACAC
CAGATCGCCT CGCTCGTGAA CCTCACGCGC GCGGCGCTGG TGTATTCGGA TGCGATCACG
CGGGTGTCGC TGATCAAGAC GCTGGCCGAC CAGGAGGGCG TGCGCATCCT GCCGCGCGAG
CCCAACGACC GCTTCCAGCC CTACACCAGC GGCGCGCTCG ACCAGCGCGT GACCGAGGAG
CTGATCGACC AGCTCGGCGA AGGCACCACG GTGGCCAGCC GCGTCAACGA CGAGCCGGGC
CTGTGGATCG GCTTCACCAT CGAGAGCGAC ACCTACTGGC TGCTGCTCGA CCCGACCCGC
TTCAGCCGCG TGGGCGGACG CACCTGGCTG GTCTGGCTCA GCACCGCCAT GGCGCTGTCG
CTGGCCGGCG CGGCGCTGAT CACGCGGCTC ATCAACCTGC CGCTCAAGCA GCTGTCGCGC
GCCACCATGC AGGTGCGCGA AGGCGAATAC GAGGCGCACC GGCTCGACGA GAGCGCCCGC
ACCAACGAGA TCCGCGCGGT CAACATCGGC TTCAACCGCA TGGCCGACCA GCTCGCCAAG
ATCGAGCAGG ACCGCGCCAT CATGCTGGCC GGCATCTCGC ACGACCTGCG CACGCCGCTC
GCGCGGCTGC GGCTCGAAAC CGAGATGAGC GTGTCCGACG AGGACGCGCG CGACCACATG
GCGGCCGACA TCGCCCAGCT CGACGCCATC ATCGACAAGT TCCTCGACTA CGCGCGCCCC
GACCATGTCG ACCCCAAGCC CGTGCTGCTG CGCGACGTGG TCGATGCCTG CACCTACGCC
GTGCAGGACT ACGAAGAAAT GAACATCCGC GTCGACGTGC CGCCCGACCT GCGCGTGCTG
GGCGACGAGG TCGAGCTCAC GCGCGTGATC TCCAACCTGG TGGAGAACGC GCGGCGCTAC
GGCAAGACAC CCTCCACCGG CATTGCCGAC GTGGTGATCC AGGCGCAATC GAACAACGAC
GCGGTGCTGA TCAAGGTGCG CGACCACGGC GCGGGCGTCG AGCCCGCCCT GCTCTCGCAG
CTGACCAAGC CCTTCTTCCG CGGCGACGTG GCGCGCACCT CCGCGGCCGG CGCCGGGCTC
GGCCTGTCGA TCGTGGCAAA GAACATCGAG CGCATGGGCG GCACCTTTGC GCTCACCAGC
ACGCCCGGGC GCGGCCTGGC GGCGCACATC CGCATGCCGC GCGCCATGCC CGAGCCGAGG
CCGGCGGCGG AAGCGCAGCA GGGCCGGCGG GCCTGA
|
|---|
| Protein sequence | MPSPLEGSGQ RDRRPGLKLG FSLFWRTFFL LALLLIGCTV AWLQTFRSLE YEPRAIQTAH
QIASLVNLTR AALVYSDAIT RVSLIKTLAD QEGVRILPRE PNDRFQPYTS GALDQRVTEE
LIDQLGEGTT VASRVNDEPG LWIGFTIESD TYWLLLDPTR FSRVGGRTWL VWLSTAMALS
LAGAALITRL INLPLKQLSR ATMQVREGEY EAHRLDESAR TNEIRAVNIG FNRMADQLAK
IEQDRAIMLA GISHDLRTPL ARLRLETEMS VSDEDARDHM AADIAQLDAI IDKFLDYARP
DHVDPKPVLL RDVVDACTYA VQDYEEMNIR VDVPPDLRVL GDEVELTRVI SNLVENARRY
GKTPSTGIAD VVIQAQSNND AVLIKVRDHG AGVEPALLSQ LTKPFFRGDV ARTSAAGAGL
GLSIVAKNIE RMGGTFALTS TPGRGLAAHI RMPRAMPEPR PAAEAQQGRR A
|
|---|
| |