| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2564 |
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| Symbol | |
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| ID | 7970041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2706861 |
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| End bp | 2708348 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644793151 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002944456 |
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| Protein GI | 239815546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.248386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCG CATTTCAACC CTGGGCCCGC ACTGCCTTGC TGCCGCTGGT CGCAGCCCTG
GCGCTGGCCG GCTGCGCGAG CGTGCCCTCG GGCGTGCCCG AGATCCAGAC CACTGCCGAG
TTCAAGGAGC AGGGCGCCGC CCCGCCCGCG GGCTGGACGC GTGCCGTGCC CTCCGAAGCG
CAGGCGCGCG GCGCCTGGTG GCTGGCGTTC AACGACCCGG TGCTCAATGC GCTGGTCGAG
AAGGCCGACG TCAGCAACAA CAACATCCAG GCCGCGGCGG CGCGGCTGGC CGAGGCCCGC
GCGCTGGCGC GCAGCGCCAA TGCCGACCGC ATGCCGCAGA TCGGCCTGGG CGCGGGCGCC
AACCGCGGCG CCGGCCTCGA CAAGGCCACG GCCAGCACCC GGCCGGCCAC CATGACCAAC
ATCGGCGCCA CCTTCTCGTA CGAGGTCGAC CTGTTCGGCC GCCTCTCGGG CGCGAGCAAT
GCGGCCAAGC TCGATGCGCA GAGCCGCGAG GCCCTGCTGC AGAGCACGCG CCTCGCGGTG
CAGGCCGAAG TGGCCCAGAC CTACCTGCAG CTGCGTGCGC TCGACGCCGA GCGCGCGCTG
GTGCGCGAGC AGGTCGAGGC CTACCGCGAC ACGCTGCGCC TCTCGCAGCG CCGCCAGCAG
GCCGGCGACA TCGCCGAGCT CGACGTGGCG CGCGTGCAGA CCGAGGTCTC GTCCACCGAG
TCGGACGCGC TCGCGCTCGA CCGGCAGCGC GCCCAGGTCG AGCATGCGCT CGCGGTGCTG
GTGGGCGACT CGGCCTCGAG CTTCGGCCTG CGCACCGACG ACTGGGCCAC CGCGCTGCCG
TCCGTGCCGC CCGGCGTGCC GGCCACGGTG CTCACGCGCC GCCCCGACGT CTCGGCCGCG
CAGAACGCGG TGCTCGCGGC GCAGGCCCGC GTGGGCGTGG CGCAGGCGGC GTGGTTCCCG
GACATCTCGC TGACCGGCGC GGCCGGCTAT GCATCGCCCG AGATCGGCGA CCTGTTCAAG
TGGTCGGCCC GCTCGTGGGG CGTGGGTGCG CTGCTCTCGC TGCCGATCTT CGACGGCGGC
CGCCGCGAAG CCGGCGTGCA GGGTGCCAAT GCCCAGCTCG ACGGCGCGCT CGCGAACTAC
CGCAACCAGG TGCTGGTGGC GTTCCAGGAG GTCGAAGACC AGCTGTCCGC GATCCGCATC
CTGCAGGAGC AGTCGGCGGT GCAGGCGCAG GCCGTCACCT CGGCGCAGCG CGCGACCAGC
CTGTCGGACA CGCGCTACCG CAACGGCTAC ATCAGCCAGC TCGACCTGCT CGACGCCCGC
CGCAGCGAAT TGCGCAACCG GCGCCAGGCG CTGCAGGTGA AGTCGGCGCA GTACCAGGCG
GCCGTGGGGC TGATCCGCGC CATCGGCGGC GGCTGGGAGG TGCCGGCGGC CACCGCAAAG
GCGCCGCCCC AGGACGGGGC AGCCGCGGTA CAGACCGCGG CGCGCTGA
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| Protein sequence | MKFAFQPWAR TALLPLVAAL ALAGCASVPS GVPEIQTTAE FKEQGAAPPA GWTRAVPSEA
QARGAWWLAF NDPVLNALVE KADVSNNNIQ AAAARLAEAR ALARSANADR MPQIGLGAGA
NRGAGLDKAT ASTRPATMTN IGATFSYEVD LFGRLSGASN AAKLDAQSRE ALLQSTRLAV
QAEVAQTYLQ LRALDAERAL VREQVEAYRD TLRLSQRRQQ AGDIAELDVA RVQTEVSSTE
SDALALDRQR AQVEHALAVL VGDSASSFGL RTDDWATALP SVPPGVPATV LTRRPDVSAA
QNAVLAAQAR VGVAQAAWFP DISLTGAAGY ASPEIGDLFK WSARSWGVGA LLSLPIFDGG
RREAGVQGAN AQLDGALANY RNQVLVAFQE VEDQLSAIRI LQEQSAVQAQ AVTSAQRATS
LSDTRYRNGY ISQLDLLDAR RSELRNRRQA LQVKSAQYQA AVGLIRAIGG GWEVPAATAK
APPQDGAAAV QTAAR
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