| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2547 |
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| Symbol | |
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| ID | 7970024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2688734 |
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| End bp | 2690581 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793134 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_002944439 |
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| Protein GI | 239815529 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.792273 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCTGC TTCAACTGCC GGCCGTCGCG CATGCCCAGC AGGATGCGCC GGCACTCGGC
GAAACCGTGG TCACCGCCAA CCGCACGCCG CAGCCGCTGT CGGACCTCGT GGGCGACGTG
TCCGTGGTCG ACCGCCAGAC CATCGAGCGC AGCGGCGCGG TCGGCGTGGC CGACGTGCTG
GCGCGCCTGC CCGGCATCGA GATCACGCGC AACGGCAGCG TGGGCAACAC CACCAGCCTG
TACATCCGCG GCGCCGAGAC CCGCTTCACG GCCGTCTACG TCGACGGCGT GCGCGTCGAT
TCGCAATCGA CCGGCGGTGC CGGCTGGGAA AGCATTCCGC TCTCGCAGAT CGACCGCATC
GAAGTGCTGC GCGGCCCGGC CGCCGCGGTG TACGGCTCCG ATGCCGTGGG CGGCGTGATC
CAGCTCTTCA CCAGGCGCGG CGAAGAAGGC GTGGCGCCTT ACGCGGGCAT CGGCTTCGGC
AGCCACGGCC TGCGCAAGGC GGAGGCGGGC GTGAGCGGCA AGTCGGGCGC CTTCGACTAT
TCGCTGGGCG CGGCGCACGA GGAAAGCCGG GGCTTCAACG TGCTGCCGAT GGACAAGCGC
ACGCCCTCCA AGGACGGCTT CACCAGCCCC GACCGCGACG GCTACCGCAG CAATTCCGGC
AACCTGCGCC TGGGCTACCA GCTCACGCCG AACCAGCGGC TGGAAGCCAC GCTGCTGTAC
AGCGACATGG AAGCCGGCTA CGACCCGCCG GTGAGCTTCA GGACCAAGCC GCCGATCCTC
TTCCGGAACG ACATCTCGAA CAACACGCTG CGCACGGCCG GGCTCTCGTG GTCGGCCAAG
TGGAACGACA TCTACAGCAC GCGCGTGCAG GTCACCGATT CGCAGTCGGT CTACAAGACC
CAGCCTTCGT TCTACCGCAC CGAAACCAAT CTGCGCGGCT ACCTGTTCCA GAACGAATTC
CGCTTCGGCC CGCACCTGGT GACGGCCACG CTCGAGCGCC GCGAAGACGC GCTCGAGAAT
GCGCCCACCA TCAGCAGCGG CCTGCTCTCG AGCAAGCGCT CGCAGGACGC GGTCTCGCTC
GGCTATGGCT TCGTGCAGGG CGCGCATTCG CTCCAGCTGC ATGTGCGCCA TGACGACGAC
AGCGAATTCG GCGGCAAGGC CACCGGCAGC GCCGCCTACG GCTACGCGAT CACGCCGCGC
CTGCGCGCCA CCGTCTCGGC CGGCACCGCC TTCCGCGCGC CCACGCTCTA CCAGCGCTTC
AGCGAATACG GCGTGGCCAG CCTCAAGCCC GAGTCGAGCC GCAACGTCGA ACTCGGCCTG
CAGTACACCG ACGGCGGCAC GCATGCGGGC ATCGTCGTCT ACCAGAACCG CGTCGAGAAC
CTGATCGTGT TCGACGGTTC GGCCACCAAC TGCCGCTCCG GCTTCGGCTG CTATGCCAGC
ACCGCGCGCG CCCGCTACCA GGGCGTGACG CTGTCGGGCG GGCACCGCAT CGGTGACGTG
AGCCTGCGCG CATCGCTCGA CTTCCAGGAC CCGCGCGACC TCGACACCGA CCACCTGCTG
GCCCGCCGCG CGCGCCGCCA CGGCACGCTG GGCGCCGACT GGCGCATTGC CGGCTGGACG
CTGGGCGCCG AGCTGCAATC GTCGAGCAAG CGCTTCGACG ACGCGGCCAA CACCCGCACG
CTGGGCGGCT ACACCGTGCT GAACCTGGTG GCCAGCACGC AGATCACGCG CGACATCGGC
CTGGTGGCCC GCGTCGACAA TGTGGGCGAC AAGGACTACA CGCTTGCACG CGGCTACGCC
ACCGGCGGCC GCAACGCATA CATCGGCCTG AAGTGGACAC CGCAATAA
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| Protein sequence | MALLQLPAVA HAQQDAPALG ETVVTANRTP QPLSDLVGDV SVVDRQTIER SGAVGVADVL
ARLPGIEITR NGSVGNTTSL YIRGAETRFT AVYVDGVRVD SQSTGGAGWE SIPLSQIDRI
EVLRGPAAAV YGSDAVGGVI QLFTRRGEEG VAPYAGIGFG SHGLRKAEAG VSGKSGAFDY
SLGAAHEESR GFNVLPMDKR TPSKDGFTSP DRDGYRSNSG NLRLGYQLTP NQRLEATLLY
SDMEAGYDPP VSFRTKPPIL FRNDISNNTL RTAGLSWSAK WNDIYSTRVQ VTDSQSVYKT
QPSFYRTETN LRGYLFQNEF RFGPHLVTAT LERREDALEN APTISSGLLS SKRSQDAVSL
GYGFVQGAHS LQLHVRHDDD SEFGGKATGS AAYGYAITPR LRATVSAGTA FRAPTLYQRF
SEYGVASLKP ESSRNVELGL QYTDGGTHAG IVVYQNRVEN LIVFDGSATN CRSGFGCYAS
TARARYQGVT LSGGHRIGDV SLRASLDFQD PRDLDTDHLL ARRARRHGTL GADWRIAGWT
LGAELQSSSK RFDDAANTRT LGGYTVLNLV ASTQITRDIG LVARVDNVGD KDYTLARGYA
TGGRNAYIGL KWTPQ
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