Gene Vapar_2544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2544 
Symbol 
ID7970021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2686566 
End bp2687387 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content68% 
IMG OID644793131 
Productprotein of unknown function DUF81 
Protein accessionYP_002944436 
Protein GI239815526 
COG category[R] General function prediction only 
COG ID[COG0730] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.367735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACTTCCC TGCTCGACCC CCTCCTGATC GCCGAATTGG CCGCGCTCGG CCTGGGCACC 
GGTTTCCTGG CGGGCCTGCT GGGCATCGGC GGCGGGATGC TCATGGTGCC GTTCATCACG
ATCATCATGG GGCACCGCGG GGTGGCCTCC GATCTTGCCG TGAAGATGGC GATCGCCACC
TCGATGGCCA CGATCATCTT CACCTCGGTG TCCAGCGTGC GCGCCCATCA CAAGCGCGGC
GCGGTGCGCT GGGACATCGT GCGGCGCCTG GCGCCCGGCA TCGTCATCGG CAGCCTGCTG
GGCAGCCTGG GCGTGTTCGC GCTGCTCAAG GGCACGGTGC TGGCCATCGT CTTTGCGCTG
TTCGTGGGCT TCTCGGCCAC GCAGATGTTC CTCGACCGCA AGCCCAAGCC CACGCGCCAG
ATGCCGGGCA CCGCGGGGCA GCTGTCGGCG GGCGGCGCCA TCGGCTTCAT CTCGGGCCTG
GTCGGCGCGG GCGGCGGCTT TGTCAGCGTG CCGTTCATGA CCTGGTGCAA CATCTCCATC
CACAACGCCG TGGCCACCAG CGCCGCGCTC GGCTTTCCGA TTGCGGTGGC CAACGTGCTG
GGCTACGTGG TGAGCGGGCA GTCGGTGCAG GGCCTTCCGG CCGGCTCGTT CGGCTACATC
TGGCTGCCCG CGCTGGTGGT CATTGCGCTG TGCAGCGTGC TCACTGCGCC GCTCGGCGCG
AAGGCGGCGC ACAACCTGCC GGTGAAGAAG CTCAAGCGCG TATTTGCGAG CATCCTGTAC
CTGCTGGCGG CCTACATGCT CTGGAAGGGC CTGCAGGGCT GA
 
Protein sequence
MTSLLDPLLI AELAALGLGT GFLAGLLGIG GGMLMVPFIT IIMGHRGVAS DLAVKMAIAT 
SMATIIFTSV SSVRAHHKRG AVRWDIVRRL APGIVIGSLL GSLGVFALLK GTVLAIVFAL
FVGFSATQMF LDRKPKPTRQ MPGTAGQLSA GGAIGFISGL VGAGGGFVSV PFMTWCNISI
HNAVATSAAL GFPIAVANVL GYVVSGQSVQ GLPAGSFGYI WLPALVVIAL CSVLTAPLGA
KAAHNLPVKK LKRVFASILY LLAAYMLWKG LQG