Gene Vapar_2535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2535 
Symbol 
ID7970012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp2676151 
End bp2676819 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content69% 
IMG OID644793122 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002944427 
Protein GI239815517 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCTGG TCCCCAACTC CCTGCACGAC GAAGTCGCCG CCACGCTGCG CGAGCAGATC 
TTCGCGGGCG CGCTGGTGCC GGGCAGCTTC CTGGACGAGG CCGCGCTGTG CGAGCGGCTG 
TCGATCTCGC GCACGCCCTT GCGCGAGGCG CTCAAAGTGC TCACGGCCGA AGGCCTGCTG 
CGCCACGAGC CGCGGCGCGG CTGCTTCGTG CGCGAGGTGA CGGAGCGCGA TCTGGACGAG 
ATATTTCCCG TCATCGCGCT GCTCGAAGGC CGCTGCGCCT ACGAGGCGGC GCGCAACGCC 
AGCGATGCGG AACTCAGCGA GCTCGACGTG CTGCACGAAC GGCTGGTGCG CCACGCCAAG 
GCCAAGCGCA TCAACGACTA CTACGCCACC AACCACCAGA TCCACGAGGC CATCATCCAG 
CTGGCCGATA ACAAGTGGCT GGCGCAGGTG ATTGGCGATC TGCGCAAAAT TCTCAAGCTG 
GCGCGGCTTC AGCAGCTGCA TGCGCCGGGC CGGCTCGAGC AGAGCCTGTC GGAGCACCTG 
GCGGTGTTCG CGGCGCTCAA GGCGCGCGAC AGCGAGGGCG CGGACGCGGC CATGCGCACG 
CACCTGACGC GCCAGCGCGA GGCGCTGCGC GCGGTGGCGC GGCAACAGAA ATCGAGGGTG 
ATGTCGTGA
 
Protein sequence
MRLVPNSLHD EVAATLREQI FAGALVPGSF LDEAALCERL SISRTPLREA LKVLTAEGLL 
RHEPRRGCFV REVTERDLDE IFPVIALLEG RCAYEAARNA SDAELSELDV LHERLVRHAK 
AKRINDYYAT NHQIHEAIIQ LADNKWLAQV IGDLRKILKL ARLQQLHAPG RLEQSLSEHL 
AVFAALKARD SEGADAAMRT HLTRQREALR AVARQQKSRV MS