| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2518 |
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| Symbol | |
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| ID | 7969995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2657749 |
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| End bp | 2659302 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644793105 |
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| Product | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit |
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| Protein accession | YP_002944410 |
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| Protein GI | 239815500 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.369793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACCA CGATCCAGCA GGCCGACCTG ATCGAATCGA TCAGCGCCGC GCTGCAGTAC
ATCAGCTACT ACCATCCCGC CGACTACATC GCCCACTTGG CCAAGGCCTA CGAGCGCGAG
CAAAGCCCCG CCGCCAAGGA CGCCATCGCG CAGATCCTCA CCAACAGCAA GATGAGCGCC
ACGGGCCACC GCCCGATCTG CCAGGACACC GGCATCGTCA ACGTGTTCCT CAAGGTGGGC
ATGGACGTGC GCTGGGGCGG CTTCACCGGC AGCCTGGACG ACGCCATCAA CGAAGGCGTG
CGCCGCGGCT ACAACCATCC CGACAACACG CTGCGCGCCT CGGTCGTGGC CGATCCGCAG
TTCGACCGCA AGAACACCAA GGACAACACG CCCGCGGTGA TCTTCACCGA GATCGTCCCG
GGCAACACCG TCGAGGTGAC GGTCGCAGCC AAGGGCGGCG GCAGCGAGAA CAAGAGCAAG
CTCGTGATGC TGAACCCCGG CGACAGCGTG GTCGACTGGG TGCTCAAGAC CGTGCCGACC
ATGGGCGCCG GCTGGTGCCC GCCGGGCATG CTGGGCATCG GCATCGGCGG CACGGCCGAG
AAGGCCGCGC TGATGGCCAA GGAAAGCCTG ATGGACGACC TCGACATGCA CGAGCTGCAG
GCCAAGAAGG CCTCGGGCGC GGAACTGAGC AAGGTCGAGG CGCTGCGCAT CGAGCTGTAC
GAGAAGGTCA ATGCGCTGGG CATCGGCGCG CAAGGCCTGG GCGGCCTGGC CACCGTGCTG
GACATCAAGA TCAAGATGTA TCCGACGCAC GCGGCCAGCA AGCCCGTGGC AATGATCCCC
AACTGCGCGG CCACGCGGCA TGCGCACTTC GTGATGGACG GCAGCGGCGC GGTCTACCTC
GACCCGCCCT CGCTCGACCT CTGGCCCGAC GTCAACTGGG CACCCGACGA AAAGAAGAGC
AAGCGCGTCG ACCTCGACAA GCTCACGCCC GCCGAAGTGG CCAGCTGGAA GCCCGGAGAC
ACACTGCTGC TCAACGGCAA GATGCTCACC GGCCGCGATG CCGCGCACAA GCGCATCCAG
GACATGCTGG CCAAGGGCGA GAAGCTGCCA GTCGATTTCA CCAACCGCGT CATCTACTAC
GTCGGCCCGG TCGATCCGGT GGGCGGCGAG GCCGTGGGCC CGGCCGGCCC GACCACCGCC
ACGCGCATGG ACGGCTTCAC CGAGATGATG CTGGCCCAGA CCGGCCTGAT CGCGATGATC
GGCAAGGCCG AGCGCGGCCC GGTTGCCATC GATGCCATCA AGAAGCACAA GAGCGCCTAC
CTCATGGCCG TGGGCGGCGC CGCCTACCTC GTGAGCAAGG CGATCAAGAC CGCCAAGGTG
GTGGGCTTCG AGGACCTGGG CATGGAAGCC ATCTATGAAT TCGACGTGGT CGACATGCCG
GTGACGGTGG CGGTCGATGC CGGCGGCACC AGCGCGCACA TCACCGGCCC GGCCGAGTGG
CAGAAGCGCA TTGCGAGCGG CGAGTTCAAG ACCATCATGA TGGAAGAGGC TTGA
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| Protein sequence | MTTTIQQADL IESISAALQY ISYYHPADYI AHLAKAYERE QSPAAKDAIA QILTNSKMSA
TGHRPICQDT GIVNVFLKVG MDVRWGGFTG SLDDAINEGV RRGYNHPDNT LRASVVADPQ
FDRKNTKDNT PAVIFTEIVP GNTVEVTVAA KGGGSENKSK LVMLNPGDSV VDWVLKTVPT
MGAGWCPPGM LGIGIGGTAE KAALMAKESL MDDLDMHELQ AKKASGAELS KVEALRIELY
EKVNALGIGA QGLGGLATVL DIKIKMYPTH AASKPVAMIP NCAATRHAHF VMDGSGAVYL
DPPSLDLWPD VNWAPDEKKS KRVDLDKLTP AEVASWKPGD TLLLNGKMLT GRDAAHKRIQ
DMLAKGEKLP VDFTNRVIYY VGPVDPVGGE AVGPAGPTTA TRMDGFTEMM LAQTGLIAMI
GKAERGPVAI DAIKKHKSAY LMAVGGAAYL VSKAIKTAKV VGFEDLGMEA IYEFDVVDMP
VTVAVDAGGT SAHITGPAEW QKRIASGEFK TIMMEEA
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